C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471393 RP11-400K9.1-001 ENSG00000240919 9606 + 8:53532908-53533704 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyMuscleOvaryPlacentaTestisENST00000471393
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000471393 0.059±0.00 0.246±0.00 0.157±0.00 0.114±0.00 0.029±0.00 0.308±0.00 0.056±0.00 0.068±0.00 0.094±0.00 0.138±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 425
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 425
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 425
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 409
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 396
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 387
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 387
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 381
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 375
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 272
ENSDART00000002595 rpl21-001 protein_coding Danio_rerio 2.8026e-45 185
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 1e-39 167
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 1e-39 167
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 4e-34 148
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 3e-25 119
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 0.00000000000004 82

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