C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472460 RP11-851M3.1-001 ENSG00000240174 9606 + 11:84639993-84640565 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartLungOvaryTestisENST00000472460
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Lung Ovary Testis
ENST00000472460 0.021±0.00 0.063±0.00 0.244±0.00 0.061±0.00 0.038±0.00 0.170±0.15 0.037±0.00 0.253±0.17 0.019±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 497
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 492
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 492
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 486
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 475
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 438
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 438
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000117594 Gm12795-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 0 195
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 6e-23 111
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 6e-23 111
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 6e-23 111
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 6e-23 111

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