C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000484010 RP11-428G5.2-001 ENSG00000242314 9606 + 12:31948334-31948827 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverLungMuscleOvaryTestisENST00000484010
Transcript ID Adipose Adrenal Brain Breast Heart Liver Lung Muscle Ovary Testis
ENST00000484010 0.121±0.00 0.159±0.00 0.033±0.00 0.097±0.00 0.029±0.00 0.139±0.00 0.060±0.00 0.083±0.00 0.053±0.00 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HZ CIL_0008HZ_0001 VISTA 12:31414716-32015883

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168697 Gm10275-001 transcribed_processed_pseudogene Mus_musculus 0 508
ENSMUST00000092620 Gm10275-002 processed_transcript Mus_musculus 0 508
ENSMUST00000126610 Rpl12-001 protein_coding Mus_musculus 0 508
ENSMUST00000121857 Gm15793-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000119608 Gm11425-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000076703 Gm9396-001 protein_coding Mus_musculus 0 486
ENSMUST00000116168 Rpl12-ps1-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000102811 Rpl12-002 processed_transcript Mus_musculus 0 475
ENSMUST00000122012 Gm6285-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000092011 Gm16519-201 protein_coding Mus_musculus 0 440
ENSMUST00000071515 Gm7117-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000079794 Gm15732-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000121298 Rpl12-ps2-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000172474 Gm20430-001 processed_pseudogene Mus_musculus 0 220
ENSMUST00000117322 Gm12038-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000154340 Rpl12-003 processed_transcript Mus_musculus 1e-34 150
ENSMUST00000134912 Rpl12-007 processed_transcript Mus_musculus 4e-34 148
ENSMUST00000121669 Gm11745-001 processed_pseudogene Mus_musculus 6e-27 124

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