C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000485656 RP11-273P3.1-001 ENSG00000243171 9606 - 8:105287830-105288365 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000485656
Transcript ID Brain
ENST00000485656 0.108±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OF CIL_0007OF_0001 UCNEbase 8:104531728-105804547
CIL_00060E CIL_00060E_0001 CGP 8:104590733-106752694
CIL_0008OP CIL_0008OP_0001 VISTA 8:104789695-105391207
CIL_0008UU CIL_0008UU_0001 VISTA 8:105021302-105622631

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000117390 Gm15661-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 0 252
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000145241 Gm16259-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000155351 Ndfip2-002 retained_intron Mus_musculus 0 222
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 1e-39 167
ENSMUST00000127286 Ndfip2-004 retained_intron Mus_musculus 1e-29 134
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 4e-24 115

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