C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type XI, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000097722 SCN11A-201 ENSDARG00000078758 7955 + 24:42714922-42889682 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENSDART00000097722
Transcript ID Heart Kidney Liver Muscle
ENSDART00000097722 0.744±0.00 0.057±0.00 0.031±0.00 0.034±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005515 IEA protein binding
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065196 Scn5a-201 protein_coding Mus_musculus 0 885
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 324
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 641
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0 710
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 641
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 326
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 710
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 680
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 710
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 641
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 641
ENSMUST00000117911 Scn5a-001 protein_coding Mus_musculus 0 885
ENSMUST00000120420 Scn5a-002 protein_coding Mus_musculus 0 885
ENSMUST00000138368 Scn2a1-003 processed_transcript Mus_musculus 0 246
ENSMUST00000144254 Scn2a1-002 protein_coding Mus_musculus 0 289
ENSMUST00000156865 Scn1a-003 processed_transcript Mus_musculus 0 250
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 283
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 296
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 250
ENST00000354534 SCN8A-001 protein_coding Homo_sapiens 0 608
ENST00000355133 SCN8A-005 protein_coding Homo_sapiens 0 608
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 250
ENST00000424833 SCN2A-003 protein_coding Homo_sapiens 0 250
ENST00000435607 SCN4A-201 protein_coding Homo_sapiens 0 865
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 296
ENST00000452182 SCN9A-003 protein_coding Homo_sapiens 0 254
ENST00000454569 SCN9A-002 protein_coding Homo_sapiens 0 254
ENST00000480032 SCN2A-005 retained_intron Homo_sapiens 0 250
ENST00000486878 SCN2A-004 retained_intron Homo_sapiens 0 231
ENST00000545061 SCN8A-201 protein_coding Homo_sapiens 0 608
ENST00000550891 SCN8A-003 protein_coding Homo_sapiens 0 279
ENST00000551216 SCN8A-004 protein_coding Homo_sapiens 0 270
ENST00000578147 SCN4A-001 protein_coding Homo_sapiens 0 848
ENST00000599343 SCN8A-202 protein_coding Homo_sapiens 0 608

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