C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488229 RPSAP4-001 ENSG00000239269 9606 + 14:94726288-94727175 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLiverMuscleOvaryTestisENST00000488229
Transcript ID Adrenal Brain Colon Kidney Liver Muscle Ovary Testis
ENST00000488229 0.129±0.00 0.059±0.00 0.069±0.00 0.166±0.00 0.016±0.00 0.078±0.00 0.090±0.00 0.067±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QQ CIL_0003QQ_0001 CGP 14:94612384-94770230

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 1018
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 1007
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 983
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 963
ENSMUST00000120596 Rpsa-ps12-001 processed_pseudogene Mus_musculus 0 933
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 907
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 896
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 896
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 865
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000162286 Gm16228-001 processed_pseudogene Mus_musculus 0 231

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