C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 8 pseudogene 48
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515599 KRT8P48-001 ENSG00000248568 9606 - 5:146706381-146707600 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000515599
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000515599 0.040±0.00 0.327±0.29 0.084±0.07 0.033±0.00 0.058±0.00 0.436±0.00 0.141±0.12 0.323±0.42 0.205±0.16 0.549±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AE CIL_0001AE_0001 CGP 5:146513103-147084784
CIL_0001AF CIL_0001AF_0001 CGP 5:146581146-147387852

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023952 Krt8-201 protein_coding Mus_musculus 0 996
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 407
ENSDART00000081215 krt8-001 protein_coding Danio_rerio 0 350
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 0 326
ENSMUST00000042957 Krt75-001 protein_coding Mus_musculus 2e-40 171
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 6e-36 156
ENSMUST00000147662 Krt7-003 protein_coding Mus_musculus 8e-35 152
ENSDART00000137533 krt8-003 retained_intron Danio_rerio 0.000000000000008 86
ENSMUST00000148248 Vim-004 retained_intron Mus_musculus 0.00000000002 75
ENSMUST00000028062 Vim-001 protein_coding Mus_musculus 0.00000000002 75
ENSMUST00000077902 Gfap-201 protein_coding Mus_musculus 0.00000000006 73
ENSMUST00000067444 Gfap-001 protein_coding Mus_musculus 0.00000000006 73
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 0.0000000008 69

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