C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000597285 CTD-3214H19.12-001 ENSG00000269228 9606 + 19:7665717-7666476 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLiverLungMuscleTestisENST00000597285
Transcript ID Adrenal Brain Colon Kidney Liver Lung Muscle Testis
ENST00000597285 0.031±0.00 0.061±0.00 0.114±0.00 0.061±0.00 0.028±0.00 0.060±0.00 0.027±0.00 0.055±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035H CIL_00035H_0001 CGP 19:7636881-7670454

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102844 Rps27a-004 protein_coding Mus_musculus 0 399
ENSMUST00000102845 Rps27a-003 protein_coding Mus_musculus 0 399
ENSMUST00000119780 Gm8430-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000078766 Rps27a-ps2-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000117559 Gm13215-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000121261 Gm8317-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000121742 Gm11759-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000119963 Gm13815-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 0 307
ENSMUST00000147782 Rps27a-002 processed_transcript Mus_musculus 0 274
ENSMUST00000191424 RP24-388H6.1-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000120373 Gm13532-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000121696 Gm12882-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000121502 Gm14101-001 processed_pseudogene Mus_musculus 9.94922e-44 180

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