C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2af
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073261 Hist1h2af-001 ENSMUSG00000061991 10090 + 13:23533906-23534304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073261
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073261 8.074±7.60 2.275±1.37 1.180±0.67 75.013±2.49 6.159±2.93 25.908±2.71 0.496±0.05 0.982±0.23 132.058±190.56 3.321±0.63 0.552±0.15 41.297±35.54 78.308±84.00 0.725±0.60

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110632 protein_coding Danio_rerio 0 351
ENSDART00000129969 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 329
ENSDART00000103013 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 329
ENSDART00000102972 protein_coding Danio_rerio 0 322
ENSDART00000155501 protein_coding Danio_rerio 0 322
ENSDART00000129239 protein_coding Danio_rerio 0 307
ENSDART00000099859 protein_coding Danio_rerio 0 305
ENSDART00000103006 protein_coding Danio_rerio 0 302
ENSDART00000126259 protein_coding Danio_rerio 0 302
ENSDART00000115109 protein_coding Danio_rerio 0 302
ENSDART00000147978 protein_coding Danio_rerio 0 298
ENSDART00000108936 protein_coding Danio_rerio 0 296
ENSDART00000155060 protein_coding Danio_rerio 0 296
ENSDART00000073402 protein_coding Danio_rerio 0 296
ENSDART00000114908 protein_coding Danio_rerio 0 285
ENSDART00000073454 protein_coding Danio_rerio 0 279
ENSDART00000129403 protein_coding Danio_rerio 0 274
ENST00000314088 HIST1H2AC-001 nonsense_mediated_decay Homo_sapiens 0 449
ENST00000331380 HIST2H2AC-001 protein_coding Homo_sapiens 0 401
ENST00000333151 HIST1H2AJ-001 protein_coding Homo_sapiens 0 460
ENST00000341023 HIST1H2AD-001 protein_coding Homo_sapiens 0 438
ENST00000358739 HIST1H2AI-001 protein_coding Homo_sapiens 0 486
ENST00000359193 HIST1H2AG-001 protein_coding Homo_sapiens 0 466
ENST00000359611 HIST1H2AM-001 protein_coding Homo_sapiens 0 449
ENST00000366695 HIST3H2A-001 protein_coding Homo_sapiens 0 542
ENST00000369159 HIST2H2AA4-001 protein_coding Homo_sapiens 0 401
ENST00000375167 H2AFX-002 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000377459 HIST1H2AH-001 protein_coding Homo_sapiens 0 453
ENST00000377791 HIST1H2AC-201 protein_coding Homo_sapiens 0 449
ENST00000389078 H2AFJ-005 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000406683 HIST1H2APS1-001 processed_pseudogene Homo_sapiens 0 237
ENST00000479986 HIST1H3J-002 processed_transcript Homo_sapiens 0 381
ENST00000501744 H2AFJ-002 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000530167 H2AFX-001 protein_coding Homo_sapiens 0 477
ENST00000544848 H2AFJ-001 protein_coding Homo_sapiens 0 420
ENST00000602637 HIST1H2AC-002 protein_coding Homo_sapiens 0 449
ENST00000607355 HIST2H2AA4-001 protein_coding Homo_sapiens 0 401
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 464
ENST00000613174 HIST1H2AL-001 protein_coding Homo_sapiens 0 499
ENST00000618958 HIST1H2AK-001 protein_coding Homo_sapiens 0 464

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