C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member J
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074556 H2afj-001 ENSMUSG00000060032 10090 + 6:136808244-136810070 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074556
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074556 43.593±7.11 171.852±16.34 48.951±12.05 8.209±4.85 62.137±41.53 141.518±17.12 8.112±5.08 64.049±40.59 34.165±17.21 69.066±38.82 2.547±0.46 90.652±46.71 9.357±6.21 7.636±4.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HB CIL_0003HB_0002 CGP 6:136808244-136828233

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110632 protein_coding Danio_rerio 0 307
ENSDART00000102972 protein_coding Danio_rerio 0 303
ENSDART00000155501 protein_coding Danio_rerio 0 303
ENSDART00000103013 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 302
ENSDART00000129239 protein_coding Danio_rerio 0 302
ENSDART00000126259 protein_coding Danio_rerio 0 291
ENSDART00000099859 protein_coding Danio_rerio 0 285
ENSDART00000129403 protein_coding Danio_rerio 0 274
ENSDART00000147978 protein_coding Danio_rerio 0 274
ENST00000314088 HIST1H2AC-001 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000331128 HIST2H2AB-001 protein_coding Homo_sapiens 0 355
ENST00000331380 HIST2H2AC-001 protein_coding Homo_sapiens 0 403
ENST00000333151 HIST1H2AJ-001 protein_coding Homo_sapiens 0 403
ENST00000341023 HIST1H2AD-001 protein_coding Homo_sapiens 0 364
ENST00000358739 HIST1H2AI-001 protein_coding Homo_sapiens 0 418
ENST00000359193 HIST1H2AG-001 protein_coding Homo_sapiens 0 383
ENST00000359611 HIST1H2AM-001 protein_coding Homo_sapiens 0 359
ENST00000366695 HIST3H2A-001 protein_coding Homo_sapiens 0 497
ENST00000369159 HIST2H2AA4-001 protein_coding Homo_sapiens 0 420
ENST00000375167 H2AFX-002 nonsense_mediated_decay Homo_sapiens 0 470
ENST00000377459 HIST1H2AH-001 protein_coding Homo_sapiens 0 398
ENST00000377791 HIST1H2AC-201 protein_coding Homo_sapiens 0 379
ENST00000389078 H2AFJ-005 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000479986 HIST1H3J-002 processed_transcript Homo_sapiens 0 315
ENST00000501744 H2AFJ-002 nonsense_mediated_decay Homo_sapiens 0 346
ENST00000530167 H2AFX-001 protein_coding Homo_sapiens 0 470
ENST00000544848 H2AFJ-001 protein_coding Homo_sapiens 0 457
ENST00000602637 HIST1H2AC-002 protein_coding Homo_sapiens 0 379
ENST00000607355 HIST2H2AA4-001 protein_coding Homo_sapiens 0 420
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 399
ENST00000613174 HIST1H2AL-001 protein_coding Homo_sapiens 0 398
ENST00000618958 HIST1H2AK-001 protein_coding Homo_sapiens 0 398

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