C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2ac
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171127 Hist1h2ac-001 ENSMUSG00000069270 10090 - 13:23683449-23683924 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171127
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171127 0.627±0.29 0.402±0.18 0.361±0.05 4.859±1.39 0.978±0.53 3.291±0.96 0.080±0.00 0.285±0.10 4.101±5.99 0.486±0.14 0.402±0.14 1.654±0.83 3.223±2.48 0.533±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LN CIL_0000LN_0003 CGP 13:23621755-23683924
CIL_0000UD CIL_0000UD_000A CGP 13:23683449-23692488

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110632 protein_coding Danio_rerio 0 346
ENSDART00000129969 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 329
ENSDART00000103013 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 329
ENSDART00000102972 protein_coding Danio_rerio 0 320
ENSDART00000155501 protein_coding Danio_rerio 0 320
ENSDART00000129239 protein_coding Danio_rerio 0 320
ENSDART00000103006 protein_coding Danio_rerio 0 318
ENSDART00000108936 protein_coding Danio_rerio 0 315
ENSDART00000155060 protein_coding Danio_rerio 0 315
ENSDART00000099859 protein_coding Danio_rerio 0 315
ENSDART00000073402 protein_coding Danio_rerio 0 307
ENSDART00000126259 protein_coding Danio_rerio 0 303
ENSDART00000114908 protein_coding Danio_rerio 0 298
ENSDART00000073454 protein_coding Danio_rerio 0 285
ENSDART00000129403 protein_coding Danio_rerio 0 283
ENSDART00000147978 protein_coding Danio_rerio 0 281
ENSDART00000115109 protein_coding Danio_rerio 0 279
ENST00000314088 HIST1H2AC-001 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000331380 HIST2H2AC-001 protein_coding Homo_sapiens 0 401
ENST00000333151 HIST1H2AJ-001 protein_coding Homo_sapiens 0 477
ENST00000341023 HIST1H2AD-001 protein_coding Homo_sapiens 0 438
ENST00000358739 HIST1H2AI-001 protein_coding Homo_sapiens 0 492
ENST00000359193 HIST1H2AG-001 protein_coding Homo_sapiens 0 475
ENST00000359611 HIST1H2AM-001 protein_coding Homo_sapiens 0 466
ENST00000366695 HIST3H2A-001 protein_coding Homo_sapiens 0 564
ENST00000369159 HIST2H2AA4-001 protein_coding Homo_sapiens 0 420
ENST00000375167 H2AFX-002 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000377459 HIST1H2AH-001 protein_coding Homo_sapiens 0 470
ENST00000377791 HIST1H2AC-201 protein_coding Homo_sapiens 0 488
ENST00000389078 H2AFJ-005 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000406683 HIST1H2APS1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000479986 HIST1H3J-002 processed_transcript Homo_sapiens 0 392
ENST00000501744 H2AFJ-002 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000530167 H2AFX-001 protein_coding Homo_sapiens 0 466
ENST00000544848 H2AFJ-001 protein_coding Homo_sapiens 0 414
ENST00000602637 HIST1H2AC-002 protein_coding Homo_sapiens 0 464
ENST00000607355 HIST2H2AA4-001 protein_coding Homo_sapiens 0 420
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 475
ENST00000613174 HIST1H2AL-001 protein_coding Homo_sapiens 0 505
ENST00000618958 HIST1H2AK-001 protein_coding Homo_sapiens 0 475

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