C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2aj
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091710 Hist1h2aj-001 ENSMUSG00000080076 10090 - 13:21721457-21721808 unprocessed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverLungOvaryPlacentaENSMUST00000091710
Transcript ID Adrenal Bladder Brain Breast Colon Liver Lung Ovary Placenta
ENSMUST00000091710 0.135±0.02 0.351±0.00 5.111±3.56 0.205±0.05 0.153±0.01 1.229±0.61 0.131±0.00 0.284±0.00 0.167±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0002 VISTA 13:21673105-22276611

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110632 protein_coding Danio_rerio 0 344
ENSDART00000129969 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 327
ENSDART00000103013 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 327
ENSDART00000102972 protein_coding Danio_rerio 0 316
ENSDART00000155501 protein_coding Danio_rerio 0 316
ENSDART00000129239 protein_coding Danio_rerio 0 309
ENSDART00000126259 protein_coding Danio_rerio 0 302
ENSDART00000108936 protein_coding Danio_rerio 0 300
ENSDART00000155060 protein_coding Danio_rerio 0 300
ENSDART00000099859 protein_coding Danio_rerio 0 300
ENSDART00000103006 protein_coding Danio_rerio 0 294
ENSDART00000073402 protein_coding Danio_rerio 0 292
ENSDART00000114908 protein_coding Danio_rerio 0 289
ENSDART00000147978 protein_coding Danio_rerio 0 289
ENSDART00000115109 protein_coding Danio_rerio 0 287
ENSDART00000073454 protein_coding Danio_rerio 0 283
ENSDART00000129403 protein_coding Danio_rerio 0 278
ENST00000314088 HIST1H2AC-001 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000331380 HIST2H2AC-001 protein_coding Homo_sapiens 0 366
ENST00000333151 HIST1H2AJ-001 protein_coding Homo_sapiens 0 420
ENST00000341023 HIST1H2AD-001 protein_coding Homo_sapiens 0 381
ENST00000358739 HIST1H2AI-001 protein_coding Homo_sapiens 0 427
ENST00000359193 HIST1H2AG-001 protein_coding Homo_sapiens 0 414
ENST00000359611 HIST1H2AM-001 protein_coding Homo_sapiens 0 392
ENST00000366695 HIST3H2A-001 protein_coding Homo_sapiens 0 496
ENST00000369159 HIST2H2AA4-001 protein_coding Homo_sapiens 0 364
ENST00000375167 H2AFX-002 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000377459 HIST1H2AH-001 protein_coding Homo_sapiens 0 399
ENST00000377791 HIST1H2AC-201 protein_coding Homo_sapiens 0 394
ENST00000389078 H2AFJ-005 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000406683 HIST1H2APS1-001 processed_pseudogene Homo_sapiens 0 243
ENST00000479986 HIST1H3J-002 processed_transcript Homo_sapiens 0 363
ENST00000501744 H2AFJ-002 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000530167 H2AFX-001 protein_coding Homo_sapiens 0 460
ENST00000544848 H2AFJ-001 protein_coding Homo_sapiens 0 398
ENST00000602637 HIST1H2AC-002 protein_coding Homo_sapiens 0 394
ENST00000607355 HIST2H2AA4-001 protein_coding Homo_sapiens 0 364
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 403
ENST00000613174 HIST1H2AL-001 protein_coding Homo_sapiens 0 444
ENST00000618958 HIST1H2AK-001 protein_coding Homo_sapiens 0 403

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