C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2ab
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078369 Hist1h2ab-001 ENSMUSG00000061615 10090 + 13:23751126-23751598 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000078369
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000078369 1.814±1.47 0.426±0.13 0.263±0.17 13.438±1.40 1.791±0.94 4.861±0.90 0.140±0.02 0.295±0.12 13.594±15.46 0.562±0.16 6.698±1.50 5.947±7.02 1.598±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UC CIL_0000UC_000D CGP 13:23746790-23751598

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110632 protein_coding Danio_rerio 0 346
ENSDART00000129969 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 340
ENSDART00000103013 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 340
ENSDART00000102972 protein_coding Danio_rerio 0 326
ENSDART00000155501 protein_coding Danio_rerio 0 326
ENSDART00000129239 protein_coding Danio_rerio 0 315
ENSDART00000103006 protein_coding Danio_rerio 0 313
ENSDART00000099859 protein_coding Danio_rerio 0 303
ENSDART00000126259 protein_coding Danio_rerio 0 303
ENSDART00000108936 protein_coding Danio_rerio 0 298
ENSDART00000155060 protein_coding Danio_rerio 0 298
ENSDART00000147978 protein_coding Danio_rerio 0 298
ENSDART00000073402 protein_coding Danio_rerio 0 291
ENSDART00000115109 protein_coding Danio_rerio 0 291
ENSDART00000114908 protein_coding Danio_rerio 0 287
ENSDART00000073454 protein_coding Danio_rerio 0 279
ENSDART00000129403 protein_coding Danio_rerio 0 276
ENST00000314088 HIST1H2AC-001 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000331380 HIST2H2AC-001 protein_coding Homo_sapiens 0 394
ENST00000333151 HIST1H2AJ-001 protein_coding Homo_sapiens 0 477
ENST00000341023 HIST1H2AD-001 protein_coding Homo_sapiens 0 455
ENST00000358739 HIST1H2AI-001 protein_coding Homo_sapiens 0 505
ENST00000359193 HIST1H2AG-001 protein_coding Homo_sapiens 0 488
ENST00000359611 HIST1H2AM-001 protein_coding Homo_sapiens 0 455
ENST00000366695 HIST3H2A-001 protein_coding Homo_sapiens 0 545
ENST00000369158 HIST2H3C-001 protein_coding Homo_sapiens 0.0001 53
ENST00000369159 HIST2H2AA4-001 protein_coding Homo_sapiens 0 431
ENST00000369163 HIST1H3H-001 protein_coding Homo_sapiens 0.00008 53
ENST00000375167 H2AFX-002 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000377459 HIST1H2AH-001 protein_coding Homo_sapiens 0 436
ENST00000377791 HIST1H2AC-201 protein_coding Homo_sapiens 0 457
ENST00000389078 H2AFJ-005 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000403683 HIST2H3A-001 protein_coding Homo_sapiens 0.0001 53
ENST00000406683 HIST1H2APS1-001 processed_pseudogene Homo_sapiens 0 237
ENST00000479986 HIST1H3J-002 processed_transcript Homo_sapiens 0 396
ENST00000501744 H2AFJ-002 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000530167 H2AFX-001 protein_coding Homo_sapiens 0 468
ENST00000544848 H2AFJ-001 protein_coding Homo_sapiens 0 411
ENST00000602637 HIST1H2AC-002 protein_coding Homo_sapiens 0 446
ENST00000607355 HIST2H2AA4-001 protein_coding Homo_sapiens 0 431
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 460
ENST00000613174 HIST1H2AL-001 protein_coding Homo_sapiens 0 494
ENST00000618958 HIST1H2AK-001 protein_coding Homo_sapiens 0 459

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