C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2an
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091751 Hist1h2an-001 ENSMUSG00000069309 10090 - 13:21786826-21787218 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverOvaryPlacentaTestisENSMUST00000091751
Transcript ID Adipose Bladder Brain Breast Colon Liver Ovary Placenta Testis
ENSMUST00000091751 0.123±0.01 0.346±0.00 6.603±4.67 0.167±0.04 0.514±0.22 3.136±2.21 1.149±0.51 2.827±0.00 0.458±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0002 VISTA 13:21673105-22276611
CIL_0000UD CIL_0000UD_000E CGP 13:21786826-21789213

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000126546 protein_coding Danio_rerio 0 307
ENST00000314088 HIST1H2AC-001 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000331380 HIST2H2AC-001 protein_coding Homo_sapiens 0 407
ENST00000333151 HIST1H2AJ-001 protein_coding Homo_sapiens 0 466
ENST00000341023 HIST1H2AD-001 protein_coding Homo_sapiens 0 455
ENST00000358739 HIST1H2AI-001 protein_coding Homo_sapiens 0 486
ENST00000359193 HIST1H2AG-001 protein_coding Homo_sapiens 0 466
ENST00000359611 HIST1H2AM-001 protein_coding Homo_sapiens 0 466
ENST00000366695 HIST3H2A-001 protein_coding Homo_sapiens 0 547
ENST00000369159 HIST2H2AA4-001 protein_coding Homo_sapiens 0 420
ENST00000375167 H2AFX-002 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000377459 HIST1H2AH-001 protein_coding Homo_sapiens 0 459
ENST00000377791 HIST1H2AC-201 protein_coding Homo_sapiens 0 453
ENST00000389078 H2AFJ-005 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000406683 HIST1H2APS1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000479986 HIST1H3J-002 processed_transcript Homo_sapiens 0 398
ENST00000501744 H2AFJ-002 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000530167 H2AFX-001 protein_coding Homo_sapiens 0 477
ENST00000544848 H2AFJ-001 protein_coding Homo_sapiens 0 420
ENST00000602637 HIST1H2AC-002 protein_coding Homo_sapiens 0 453
ENST00000607355 HIST2H2AA4-001 protein_coding Homo_sapiens 0 420
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 475
ENST00000613174 HIST1H2AL-001 protein_coding Homo_sapiens 0 510
ENST00000618958 HIST1H2AK-001 protein_coding Homo_sapiens 0 475

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