C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2aa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072391 Hist1h2aa-001 ENSMUSG00000060081 10090 + 13:23934462-23934851 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENSMUST00000072391
Transcript ID Ovary Testis
ENSMUST00000072391 1.575±1.01 22.006±11.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LK CIL_0000LK_0005 CGP 13:23933773-23934851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000126259 protein_coding Danio_rerio 0 291
ENSDART00000099859 protein_coding Danio_rerio 0 285
ENSDART00000115109 protein_coding Danio_rerio 0 279
ENSDART00000147978 protein_coding Danio_rerio 0 279
ENSDART00000110632 protein_coding Danio_rerio 0 274
ENSDART00000073402 protein_coding Danio_rerio 0 268
ENSDART00000129239 protein_coding Danio_rerio 0 268
ENSDART00000108936 protein_coding Danio_rerio 0 265
ENSDART00000155060 protein_coding Danio_rerio 0 265
ENSDART00000102972 protein_coding Danio_rerio 0 265
ENSDART00000155501 protein_coding Danio_rerio 0 265
ENSDART00000129969 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 263
ENSDART00000073454 protein_coding Danio_rerio 0 263
ENSDART00000103006 protein_coding Danio_rerio 0 252
ENSDART00000103013 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 252
ENSDART00000114908 protein_coding Danio_rerio 0 244
ENSDART00000129403 protein_coding Danio_rerio 0 241
ENST00000314088 HIST1H2AC-001 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000333151 HIST1H2AJ-001 protein_coding Homo_sapiens 0 311
ENST00000341023 HIST1H2AD-001 protein_coding Homo_sapiens 0 283
ENST00000358739 HIST1H2AI-001 protein_coding Homo_sapiens 0 322
ENST00000359193 HIST1H2AG-001 protein_coding Homo_sapiens 0 305
ENST00000359611 HIST1H2AM-001 protein_coding Homo_sapiens 0 305
ENST00000366695 HIST3H2A-001 protein_coding Homo_sapiens 0 355
ENST00000375167 H2AFX-002 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000377459 HIST1H2AH-001 protein_coding Homo_sapiens 0 294
ENST00000377791 HIST1H2AC-201 protein_coding Homo_sapiens 0 313
ENST00000389078 H2AFJ-005 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000406683 HIST1H2APS1-001 processed_pseudogene Homo_sapiens 3e-38 161
ENST00000479986 HIST1H3J-002 processed_transcript Homo_sapiens 0 278
ENST00000501744 H2AFJ-002 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000530167 H2AFX-001 protein_coding Homo_sapiens 0 342
ENST00000544848 H2AFJ-001 protein_coding Homo_sapiens 0 285
ENST00000602637 HIST1H2AC-002 protein_coding Homo_sapiens 0 313
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 311
ENST00000613174 HIST1H2AL-001 protein_coding Homo_sapiens 0 333
ENST00000618958 HIST1H2AK-001 protein_coding Homo_sapiens 0 311

Loading