C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 26
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457695 HNRNPA1P26-001 ENSG00000239345 9606 - X:100855288-100856379 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartMuscleOvaryENST00000457695
Transcript ID Adipose Adrenal Brain Colon Heart Muscle Ovary
ENST00000457695 0.013±0.00 0.068±0.00 0.057±0.00 0.326±0.16 0.050±0.00 0.048±0.00 0.128±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YO CIL_0000YO_0002 CGP X:100820359-100874345
CIL_0007B9 CIL_0007B9_0001 CGP X:100843324-100929433

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 1315
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 1232
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 821
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 821
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 821
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 793
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 765
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 752
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 665
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 464
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000166043 Gm17082-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 5e-31 139

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