C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00025A_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196562-ENSG00000124126 CGP 9606 20:47656348-48827883
GeneTranscriptPositionBiotype
ENSG00000124126 (PREX1)
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 		ENST00000371941 (PREX1-001) 48624252-48827883 protein_coding
ENST00000482556 (PREX1-002) 48624252-48657127 nonsense_mediated_decay
ENST00000496915 (PREX1-003) 48642113-48642738 processed_transcript
ENST00000620554 (PREX1-004) 48692323-48692684 protein_coding
ENSG00000124151 (NCOA3)
nuclear receptor coactivator 3 		ENST00000371997 (NCOA3-002) 47501941-47655742 protein_coding
ENST00000371998 (NCOA3-003) 47501927-47653619 protein_coding
ENST00000372004 (NCOA3-001) 47501902-47656877 protein_coding
ENST00000490248 (NCOA3-004) 47622958-47624073 processed_transcript
ENST00000497292 (NCOA3-005) 47627002-47628790 processed_transcript
ENSG00000215448 (SRMP1)
spermidine synthase pseudogene 1 		ENST00000398959 (SRMP1-001) 47859788-47860672 processed_pseudogene
ENSG00000228503 (RP11-347D21.2)
 ENST00000416646 (RP11-347D21.2-001) 47958022-47958603 lincRNA
ENSG00000229522 (LINC01523)
long intergenic non-protein coding RNA 1523 		ENST00000425385 (LINC01523-001) 47983404-47984313 lincRNA
ENSG00000234967 (RP11-347D21.1)
 ENST00000431915 (RP11-347D21.1-001) 47950799-47952055 lincRNA
ENSG00000235621 (LINC00494)
long intergenic non-protein coding RNA 494 		ENST00000416742 (LINC00494-004) 48359950-48370629 lincRNA
ENST00000425021 (LINC00494-001) 48360012-48360904 lincRNA
ENST00000433094 (LINC00494-002) 48365647-48370629 lincRNA
ENST00000545181 (LINC00494-201) 48364889-48370629 lincRNA
ENSG00000237423 (LINC01522)
long intergenic non-protein coding RNA 1522 		ENST00000428999 (LINC01522-001) 47980488-47988744 lincRNA
ENSG00000274261 (RP1-66N13.4)
 ENST00000615740 (RP1-66N13.4-001) 48407367-48410716 lincRNA
ENSG00000276923 (RP11-321P16.1)
 ENST00000622092 (RP11-321P16.1-001) 48073869-48074188 lincRNA
ENSG00000278231 (RP5-906C1.1)
 ENST00000618168 (RP5-906C1.1-001) 48821688-48849458 lincRNA
CIL_00025A_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006800-ENSMUSG00000039621 CGP 10090 2:166073089-166713832
GeneTranscriptPositionBiotype
ENSMUSG00000006800 (Sulf2)
sulfatase 2 		ENSMUST00000088086 (Sulf2-004) 166073920-166155285 protein_coding
ENSMUST00000109249 (Sulf2-001) 166073089-166155663 protein_coding
ENSMUST00000125503 (Sulf2-007) 166074670-166076018 retained_intron
ENSMUST00000133395 (Sulf2-005) 166132593-166154423 processed_transcript
ENSMUST00000139266 (Sulf2-006) 166093516-166154806 processed_transcript
ENSMUST00000143996 (Sulf2-003) 166074815-166078119 processed_transcript
ENSMUST00000146497 (Sulf2-002) 166074150-166155605 processed_transcript
ENSMUSG00000027678 (Ncoa3)
nuclear receptor coactivator 3 		ENSMUST00000088095 (Ncoa3-201) 165992637-166073242 protein_coding
ENSMUST00000109252 (Ncoa3-001) 165992636-166071470 protein_coding
ENSMUST00000139394 (Ncoa3-004) 166067430-166070200 retained_intron
ENSMUST00000139658 (Ncoa3-003) 166060820-166066202 retained_intron
ENSMUST00000153507 (Ncoa3-002) 166047918-166052398 processed_transcript
ENSMUSG00000039621 (Prex1)
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 		ENSMUST00000036719 (Prex1-001) 166566342-166713832 protein_coding
ENSMUST00000099080 (Prex1-003) 166566960-166638968 protein_coding
ENSMUST00000109246 (Prex1-004) 166566966-166582071 protein_coding
ENSMUST00000127553 (Prex1-002) 166644382-166713791 retained_intron
ENSMUST00000136564 (Prex1-007) 166599678-166603087 retained_intron
ENSMUST00000136974 (Prex1-008) 166568317-166572977 processed_transcript
ENSMUST00000140624 (Prex1-005) 166644595-166713602 retained_intron
ENSMUST00000152238 (Prex1-006) 166633423-166703594 processed_transcript
ENSMUSG00000081123 (Gm11469)
predicted gene 11469 		ENSMUST00000119751 (Gm11469-001) 166500273-166500768 processed_pseudogene
ENSMUSG00000084840 (Gm11468)
predicted gene 11468 		ENSMUST00000152987 (Gm11468-001) 166273908-166294831 lincRNA
ENSMUSG00000085046 (Gm11467)
predicted gene 11467 		ENSMUST00000129407 (Gm11467-001) 166207230-166208627 lincRNA
ENSMUSG00000085129 (5031425F14Rik)
RIKEN cDNA 5031425F14 gene 		ENSMUST00000127920 (5031425F14Rik-001) 166447451-166459232 lincRNA
ENSMUSG00000085618 (Gm11466)
predicted gene 11466 		ENSMUST00000148017 (Gm11466-001) 166189793-166190862 lincRNA
ENSMUSG00000085682 (Gm14267)
predicted gene 14267 		ENSMUST00000123480 (Gm14267-001) 166502101-166505584 lincRNA
ENSMUSG00000087617 (Gm14268)
predicted gene 14268 		ENSMUST00000132465 (Gm14268-002) 166381114-166398187 lincRNA
ENSMUST00000151070 (Gm14268-001) 166380828-166398157 lincRNA
ENSMUSG00000089145 (Gm25265)
predicted gene, 25265 		ENSMUST00000158520 (Gm25265-201) 166682074-166682420 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00025A_0001ENSG00000124126ENST00000371941ENST00000482556ENST00000496915ENST00000620554ENSG00000124151ENST00000371997ENST00000371998ENST00000372004ENST00000490248ENST00000497292ENSG00000215448ENST00000398959ENSG00000228503ENST00000416646ENSG00000229522ENST00000425385ENSG00000234967ENST00000431915ENSG00000235621ENST00000416742ENST00000425021ENST00000433094ENST00000545181ENSG00000237423ENST00000428999ENSG00000274261ENST00000615740ENSG00000276923ENST00000622092ENSG00000278231ENST00000618168CIL_00025A_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00025A_0001ENSG00000124126ENST00000371941ENST00000482556ENSG00000124151ENST00000371997ENST00000371998ENST00000372004ENSG00000215448ENST00000398959ENSG00000228503ENST00000416646ENSG00000229522ENST00000425385ENSG00000234967ENST00000431915ENSG00000235621ENST00000416742ENST00000425021ENST00000433094ENST00000545181ENSG00000237423ENST00000428999ENSG00000274261ENST00000615740ENSG00000276923ENST00000622092ENSG00000278231ENST00000618168CIL_00025A_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124126 ENST00000371941 11.584±0.00 13.786±0.00 1.307±0.00 21.053±12.21 2.518±0.75 2.481±0.00 2.109±1.75 3.807±2.19 2.305±0.45 12.243±6.64 0.901±0.00 2.868±0.90 5.584±1.89 4.924±0.80
ENST00000482556 N/A 7.506±0.00 N/A 10.120±0.00 1.131±0.00 0.633±0.00 N/A N/A 0.563±0.00 3.858±0.00 N/A 1.629±0.21 1.992±0.54 1.870±0.24
ENST00000496915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000124151 ENST00000371997 N/A N/A 2.056±0.00 0.896±0.00 N/A N/A N/A N/A 1.822±0.00 N/A N/A 3.563±0.00 N/A N/A
ENST00000371998 N/A N/A N/A N/A 3.599±0.00 3.736±0.00 1.974±0.00 1.818±0.00 4.412±0.00 7.559±0.00 2.324±1.61 5.364±0.00 N/A N/A
ENST00000372004 N/A 10.023±0.00 N/A 3.215±0.00 4.861±0.00 4.829±1.84 3.397±2.03 2.454±0.00 3.205±1.21 5.260±1.18 6.149±0.00 5.252±0.90 7.021±3.65 4.989±1.27
ENST00000490248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000215448 ENST00000398959 N/A N/A N/A N/A N/A 0.199±0.00 N/A N/A N/A N/A N/A N/A N/A 0.021±0.00
ENSG00000228503 ENST00000416646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.737±0.67
ENSG00000229522 ENST00000425385 0.085±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.976±0.09
ENSG00000234967 ENST00000431915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.198±0.22
ENSG00000235621 ENST00000416742 N/A N/A 0.176±0.00 N/A N/A N/A 0.013±0.00 N/A N/A 0.012±0.00 N/A N/A N/A 1.322±0.00
ENST00000425021 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.270±0.00 N/A N/A N/A N/A
ENST00000433094 0.027±0.00 N/A N/A 0.011±0.00 0.041±0.00 0.020±0.01 0.013±0.00 0.238±0.21 0.062±0.00 N/A N/A 0.093±0.05 0.015±0.00 0.524±0.00
ENST00000545181 N/A 1.120±0.00 N/A N/A 0.039±0.00 0.075±0.00 N/A N/A 0.015±0.00 N/A N/A 0.186±0.13 N/A N/A
ENSG00000237423 ENST00000428999 N/A N/A N/A N/A 0.135±0.00 N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A 1.832±0.60
ENSG00000274261 ENST00000615740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.09
ENSG00000276923 ENST00000622092 N/A 0.294±0.00 N/A 0.201±0.00 N/A N/A N/A 3.062±0.00 N/A N/A N/A 1.600±0.00 N/A 0.215±0.05
ENSG00000278231 ENST00000618168 0.688±0.00 0.939±0.00 N/A 2.116±0.00 0.558±0.51 0.392±0.00 0.371±0.00 N/A 0.078±0.00 1.237±0.40 N/A 0.852±0.41 0.310±0.12 0.642±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006800 ENSMUST00000088086 26.716±4.61 14.219±7.13 20.571±1.10 15.820±3.43 13.287±4.49 7.824±0.00 6.489±1.52 5.553±1.30 3.462±1.68 9.201±3.55 1.512±0.32 78.041±30.86 27.025±15.74 2.018±0.14
ENSMUST00000109249 9.377±0.00 8.478±4.05 N/A N/A 12.401±1.06 6.913±0.87 N/A N/A 2.495±0.00 7.378±0.65 N/A 55.130±13.89 N/A N/A
ENSMUST00000125503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146497 N/A N/A N/A 26.274±0.00 N/A N/A N/A N/A N/A N/A N/A 140.159±0.00 49.528±7.80 3.470±0.00
ENSMUSG00000027678 ENSMUST00000088095 10.442±1.62 7.396±3.11 7.931±3.69 5.486±2.09 7.841±4.35 8.070±2.59 4.851±2.32 4.805±0.97 2.101±1.05 6.581±0.17 1.713±0.85 14.666±5.42 5.282±2.83 2.559±0.31
ENSMUST00000109252 N/A 5.003±0.42 7.570±0.00 N/A 7.389±1.94 6.324±1.24 4.320±0.00 7.161±1.17 2.625±1.04 7.669±0.89 0.796±0.10 N/A 6.162±4.04 3.184±1.22
ENSMUST00000139394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039621 ENSMUST00000036719 6.904±3.46 11.789±0.84 2.405±0.11 18.435±3.58 24.696±15.82 5.933±1.07 2.111±0.36 4.392±0.63 3.828±2.45 19.212±2.61 1.229±0.27 9.846±2.41 6.408±1.73 1.675±0.35
ENSMUST00000099080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.727±0.34
ENSMUST00000109246 N/A N/A N/A N/A N/A 3.104±0.41 0.998±0.00 N/A 1.161±0.59 N/A N/A N/A N/A N/A
ENSMUST00000127553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081123 ENSMUST00000119751 0.116±0.02 N/A 0.024±0.00 0.174±0.15 0.269±0.00 0.310±0.12 N/A N/A 0.058±0.03 N/A N/A 0.958±0.22 0.962±0.65 0.294±0.17
ENSMUSG00000084840 ENSMUST00000152987 N/A N/A N/A 0.322±0.32 N/A N/A N/A 0.393±0.00 N/A 0.312±0.10 N/A 0.632±0.44 0.738±0.02 0.147±0.00
ENSMUSG00000085046 ENSMUST00000129407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.053±0.00
ENSMUSG00000085129 ENSMUST00000127920 0.189±0.04 0.216±0.12 0.111±0.00 0.097±0.11 0.420±0.21 0.287±0.14 0.064±0.01 0.026±0.02 0.064±0.03 0.129±0.05 0.035±0.02 0.259±0.14 0.034±0.02 0.022±0.01
ENSMUSG00000085618 ENSMUST00000148017 N/A N/A N/A N/A N/A N/A N/A 0.938±0.00 0.464±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000085682 ENSMUST00000123480 0.269±0.19 N/A 0.017±0.00 0.174±0.12 N/A 0.179±0.05 1.429±0.61 0.066±0.00 0.069±0.04 N/A 0.145±0.00 0.515±0.29 0.549±0.25 0.190±0.08
ENSMUSG00000087617 ENSMUST00000132465 0.049±0.00 N/A N/A 0.013±0.00 N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A
ENSMUST00000151070 0.038±0.00 N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 0.064±0.00 0.540±0.20
ENSMUSG00000089145 ENSMUST00000158520 0.184±0.00 N/A N/A 0.220±0.00 0.419±0.00 N/A N/A N/A 0.214±0.09 N/A N/A N/A 0.029±0.00 N/A

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