C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21 pseudogene 71
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465598 RPL21P71-001 ENSG00000239412 9606 + 3:147276768-147277252 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverLungTestisENST00000465598
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Lung Testis
ENST00000465598 0.029±0.00 0.120±0.00 0.061±0.00 0.055±0.00 0.089±0.00 0.027±0.00 0.028±0.00 0.096±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0001 UCNEbase 3:146747615-148369526
CIL_00092K CIL_00092K_0001 VISTA 3:147012442-147613983
CIL_00092J CIL_00092J_0001 VISTA 3:147031749-147633313
CIL_0008O7 CIL_0008O7_0001 VISTA 3:147107359-147708549

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 265
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 6e-27 124
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 3e-25 119
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 3e-25 119
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 3e-25 119
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 3e-25 119
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 3e-25 119
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 3e-25 119
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 3e-25 119
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 3e-25 119
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 3e-25 119
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 3e-25 119
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 3e-25 119
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 3e-25 119
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 3e-25 119
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 3e-25 119
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 3e-25 119
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 1e-24 117
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 1e-23 113
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 1e-23 113
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 1e-23 113
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 1e-23 113
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 1e-23 113
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 1e-23 113
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 1e-23 113
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 6e-22 108
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 6e-22 108
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 6e-22 108
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 6e-22 108
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 6e-22 108
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 3e-20 102
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 3e-20 102
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 3e-20 102
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 4e-19 99
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 1e-18 97

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