C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401715 RP3-486D24.1-001 ENSG00000216368 9606 + 6:10118452-10119253 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastMuscleENST00000401715
Transcript ID Adrenal Brain Breast Muscle
ENST00000401715 0.066±0.00 0.024±0.00 0.046±0.00 0.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NC CIL_0007NC_0001 UCNEbase 6:8153140-10408054
CIL_000381 CIL_000381_0001 CGP 6:8413068-10211608
CIL_00097A CIL_00097A_0001 VISTA 6:10093642-10694839
CIL_00086X CIL_00086X_0001 VISTA 6:10107199-10709812

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 798
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 793
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 789
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 787
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 782
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 776
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 776
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 765
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 749
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 749
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 736
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 732
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 723
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 704
ENSMUST00000071565 Gm4978-201 protein_coding Mus_musculus 0 701
ENSMUST00000118638 Gm13039-001 processed_pseudogene Mus_musculus 0 695
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000119589 Gm16071-001 processed_pseudogene Mus_musculus 0 689
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 689
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 686
ENSMUST00000184700 Gm7863-001 processed_pseudogene Mus_musculus 0 678
ENSMUST00000185999 RP23-16N14.6-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 669
ENSMUST00000185009 Gm14214-001 translated_processed_pseudogene Mus_musculus 0 669
ENSMUST00000122355 Gm11760-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 658
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000117240 Gm11989-001 processed_pseudogene Mus_musculus 0 651
ENSMUST00000165944 RP24-170M24.1-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000184654 Gm14214-002 protein_coding Mus_musculus 0 621
ENSMUST00000118291 Gm16166-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000121278 Gm13726-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 604
ENSMUST00000119952 Gm15836-001 processed_pseudogene Mus_musculus 0 603
ENSMUST00000119629 Gm11979-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000117439 Gm12385-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000120236 Gm14141-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000188004 RP23-78M21.1-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000116081 Gm14853-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000188170 RP23-248N10.1-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000119908 Gm9005-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 407
ENSMUST00000117903 Gm8097-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000129673 Rpl7a-005 processed_transcript Mus_musculus 0 305
ENSMUST00000149339 Rpl7a-006 processed_transcript Mus_musculus 0 200
ENSMUST00000177515 Gm20660-001 processed_pseudogene Mus_musculus 8.00141e-43 178
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0.0000000001 71
ENSMUST00000119680 Gm15702-001 processed_pseudogene Mus_musculus 0.0000003 60

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