C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000147978 ENSDARG00000093071 7955 + 7:7234512-7234898 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENSDART00000147978
Transcript ID Kidney
ENSDART00000147978 0.960±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LK CIL_0000LK_0003 CGP 7:7232773-7234898

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006334 IEA nucleosome assembly
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052686 H2afx-001 protein_coding Mus_musculus 0 291
ENSMUST00000070124 Hist1h2ai-001 protein_coding Mus_musculus 0 300
ENSMUST00000072391 Hist1h2aa-001 protein_coding Mus_musculus 0 279
ENSMUST00000073261 Hist1h2af-001 protein_coding Mus_musculus 0 298
ENSMUST00000074556 H2afj-001 protein_coding Mus_musculus 0 274
ENSMUST00000074752 Hist1h2ak-001 protein_coding Mus_musculus 0 313
ENSMUST00000074976 Hist2h2aa1-001 protein_coding Mus_musculus 0 259
ENSMUST00000078369 Hist1h2ab-001 protein_coding Mus_musculus 0 298
ENSMUST00000078756 Hist2h2aa2-001 protein_coding Mus_musculus 0 259
ENSMUST00000081342 Hist1h2ap-001 protein_coding Mus_musculus 0 289
ENSMUST00000090776 Hist1h2ad-001 protein_coding Mus_musculus 0 294
ENSMUST00000090782 Hist2h2ac-001 protein_coding Mus_musculus 0 257
ENSMUST00000091708 Hist1h2al-201 protein_coding Mus_musculus 0 254
ENSMUST00000091710 Hist1h2aj-001 unprocessed_pseudogene Mus_musculus 0 289
ENSMUST00000091741 Hist1h2ag-001 protein_coding Mus_musculus 0 289
ENSMUST00000091742 Hist1h2ah-001 protein_coding Mus_musculus 0 292
ENSMUST00000091745 Hist1h2ao-001 protein_coding Mus_musculus 0 289
ENSMUST00000102969 Hist1h2ae-001 protein_coding Mus_musculus 0 294
ENSMUST00000118168 Gm11336-001 unprocessed_pseudogene Mus_musculus 0 206
ENSMUST00000171127 Hist1h2ac-001 protein_coding Mus_musculus 0 281
ENST00000333151 HIST1H2AJ-001 protein_coding Homo_sapiens 0 291
ENST00000375167 H2AFX-002 nonsense_mediated_decay Homo_sapiens 0 289
ENST00000389078 H2AFJ-005 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000501744 H2AFJ-002 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000530167 H2AFX-001 protein_coding Homo_sapiens 0 289
ENST00000544848 H2AFJ-001 protein_coding Homo_sapiens 0 274

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