C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L12 pseudogene 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471280 RPL12P38-001 ENSG00000213228 9606 - 17:60433723-60434212 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryTestisENST00000471280
Transcript ID Breast Ovary Testis
ENST00000471280 0.065±0.00 0.113±0.05 0.196±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000701 CIL_000701_0001 CGP 17:60392429-60526219

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092620 Gm10275-002 processed_transcript Mus_musculus 0 569
ENSMUST00000126610 Rpl12-001 protein_coding Mus_musculus 0 569
ENSMUST00000168697 Gm10275-001 transcribed_processed_pseudogene Mus_musculus 0 564
ENSMUST00000119608 Gm11425-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000076703 Gm9396-001 protein_coding Mus_musculus 0 547
ENSMUST00000121857 Gm15793-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000116168 Rpl12-ps1-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000102811 Rpl12-002 processed_transcript Mus_musculus 0 521
ENSMUST00000122012 Gm6285-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000092011 Gm16519-201 protein_coding Mus_musculus 0 455
ENSMUST00000071515 Gm7117-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000079794 Gm15732-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000121298 Rpl12-ps2-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000172474 Gm20430-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000117322 Gm12038-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000154340 Rpl12-003 processed_transcript Mus_musculus 6e-37 158
ENSMUST00000134912 Rpl12-007 processed_transcript Mus_musculus 1e-33 147
ENSMUST00000121669 Gm11745-001 processed_pseudogene Mus_musculus 5e-23 111

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