C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119350 Hmgb1-ps1-001 ENSMUSG00000084129 10090 + 11:41141763-41142396 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119350
Transcript ID Bladder Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119350 0.621±0.00 0.304±0.19 0.075±0.00 0.669±0.68 0.106±0.00 0.080±0.00 0.157±0.01 0.086±0.07 0.021±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 784
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 584
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 776
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 776
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 584
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 776
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 776
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 625
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 418
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 525
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 582
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 228
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 278
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 736
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 305
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 736

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