C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000615653 RP11-19G24.3-001 ENSG00000275029 9606 - 17:37143607-37144291 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000615653
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000615653 0.018±0.00 0.061±0.00 0.218±0.00 0.129±0.01 0.293±0.16 0.070±0.00 0.694±0.64 0.752±0.00 0.368±0.00 0.504±0.00 0.288±0.15 0.146±0.00 0.211±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085Q CIL_00085Q_0001 VISTA 17:36672050-37272645
CIL_00085M CIL_00085M_0001 VISTA 17:36678794-37279927
CIL_0008DP CIL_0008DP_0001 VISTA 17:36790335-37391543
CIL_0008GS CIL_0008GS_0001 VISTA 17:36817120-37418221
CIL_0005HT CIL_0005HT_0002 CGP 17:36948875-37406818
CIL_0005SZ CIL_0005SZ_0001 CGP 17:37084988-37406818
CIL_0007ND CIL_0007ND_006D UCNEbase 17:37142003-37150541

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 725
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 723
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 723
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 723
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 684
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 678
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 669
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 669
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 667
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 662
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000120842 Gm8152-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 601
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 551
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000118469 Gm15778-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 431
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 342
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 311
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0 195

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