C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12950
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121683 Gm12950-001 ENSMUSG00000082592 10090 + 4:116448788-116449204 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverPlacentaTestisENSMUST00000121683
Transcript ID Adipose Bladder Brain Breast Liver Placenta Testis
ENSMUST00000121683 0.137±0.00 0.126±0.00 0.118±0.00 0.167±0.00 0.042±0.02 0.135±0.00 0.124±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004A3 CIL_0004A3_0002 CGP 4:116221618-116464183

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 532
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 501
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 549
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 549
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 549
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 549
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 420
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 503
ENST00000427081 RP4-631H13.5-001 processed_pseudogene Homo_sapiens 0 357
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 507
ENST00000444762 RP11-337A23.5-001 processed_pseudogene Homo_sapiens 0 368
ENST00000497682 H3F3AP3-001 processed_pseudogene Homo_sapiens 0 468
ENST00000505098 CTC-505O3.1-001 processed_pseudogene Homo_sapiens 0 436
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 0 233
ENST00000532005 RP11-745I13.1-001 processed_pseudogene Homo_sapiens 0 207
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 318
ENST00000603240 RP11-27M5.1-001 processed_pseudogene Homo_sapiens 7e-30 134
ENST00000604278 RP11-124D2.7-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 327
ENST00000604456 RP11-124D2.7-002 processed_transcript Homo_sapiens 0 353

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