C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5257
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121823 Gm5257-001 ENSMUSG00000082012 10090 + 1:75636390-75637179 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungOvaryPlacentaENSMUST00000121823
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Ovary Placenta
ENSMUST00000121823 0.168±0.06 0.015±0.01 0.006±0.01 0.056±0.00 0.048±0.00 0.007±0.00 0.148±0.00 0.330±0.12 0.509±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_00082R CIL_00082R_0002 VISTA 1:75469003-76073592
CIL_0008ED CIL_0008ED_0002 VISTA 1:75532718-76135169
CIL_0006O4 CIL_0006O4_0002 CGP 1:75546266-77515088

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393397 AC005042.2-001 processed_pseudogene Homo_sapiens 0 556
ENST00000396414 RP11-242C24.2-001 processed_pseudogene Homo_sapiens 0 497
ENST00000441433 RPL7AP38-001 processed_pseudogene Homo_sapiens 0 531
ENST00000473054 RP11-204K16.1-001 processed_pseudogene Homo_sapiens 0 614
ENST00000473913 RP11-463O9.1-001 processed_pseudogene Homo_sapiens 0 676
ENST00000476420 RPL7AP56-001 processed_pseudogene Homo_sapiens 0 285
ENST00000477943 RPL7AP6-001 processed_pseudogene Homo_sapiens 0 761
ENST00000482859 RPL7AP30-001 processed_pseudogene Homo_sapiens 0 725
ENST00000483820 RPL7AP4-001 processed_pseudogene Homo_sapiens 0 540
ENST00000496515 RPL7AP2-001 processed_pseudogene Homo_sapiens 0 479
ENST00000541658 RPL7AP3-001 processed_pseudogene Homo_sapiens 0 414

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