C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393397 AC005042.2-001 ENSG00000227331 9606 + 2:158548425-158549224 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryTestisENST00000393397
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Testis
ENST00000393397 0.059±0.00 0.188±0.00 1.655±0.00 0.309±0.00 0.358±0.06 0.280±0.00 0.302±0.00 0.512±0.41 0.409±0.29 0.202±0.22 0.074±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0001 CGP 2:158456964-158862958

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 702
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 702
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 697
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 697
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 691
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 669
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 664
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 662
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 658
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 658
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 647
ENSMUST00000161633 Gm5766-001 transcribed_processed_pseudogene Mus_musculus 0 640
ENSMUST00000160520 Gm5766-002 processed_transcript Mus_musculus 0 640
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000071565 Gm4978-201 protein_coding Mus_musculus 0 634
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000119952 Gm15836-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000118638 Gm13039-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 590
ENSMUST00000121575 Gm12630-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000165944 RP24-170M24.1-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000185009 Gm14214-001 translated_processed_pseudogene Mus_musculus 0 580
ENSMUST00000184700 Gm7863-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000121278 Gm13726-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 568
ENSMUST00000185999 RP23-16N14.6-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000121823 Gm5257-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000117240 Gm11989-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000117439 Gm12385-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000104977 Gm4877-201 protein_coding Mus_musculus 0 545
ENSMUST00000119629 Gm11979-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000184654 Gm14214-002 protein_coding Mus_musculus 0 523
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 523
ENSMUST00000171395 Gm8425-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000118973 Gm15617-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000187766 RP23-223O13.2-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000122273 Gm12269-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000116081 Gm14853-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000188170 RP23-248N10.1-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000188004 RP23-78M21.1-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000129972 Gm16304-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000119908 Gm9005-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 359
ENSMUST00000160362 Gm2976-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000172650 Gm7393-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000117903 Gm8097-001 processed_pseudogene Mus_musculus 1.96182e-44 183
ENSMUST00000119680 Gm15702-001 processed_pseudogene Mus_musculus 5e-30 135
ENSMUST00000129673 Rpl7a-005 processed_transcript Mus_musculus 0.000000000000001 88
ENSMUST00000184119 Gm27189-001 processed_pseudogene Mus_musculus 0.00000000001 75
ENSMUST00000118404 Gm12713-001 processed_pseudogene Mus_musculus 0.00000008 62

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