C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396414 RP11-242C24.2-001 ENSG00000255991 9606 - 12:39466442-39467345 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000396414
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000396414 0.041±0.00 0.088±0.00 0.088±0.04 0.046±0.00 0.280±0.00 0.040±0.00 0.022±0.00 0.022±0.00 0.076±0.00 0.027±0.00 0.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HM CIL_0006HM_0001 CGP 12:39293228-39619751

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 645
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 603
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 603
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000160520 Gm5766-002 processed_transcript Mus_musculus 0 582
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 580
ENSMUST00000161633 Gm5766-001 transcribed_processed_pseudogene Mus_musculus 0 579
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000118638 Gm13039-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000071565 Gm4978-201 protein_coding Mus_musculus 0 560
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000119629 Gm11979-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000121575 Gm12630-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000184700 Gm7863-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000119952 Gm15836-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 540
ENSMUST00000104977 Gm4877-201 protein_coding Mus_musculus 0 540
ENSMUST00000117240 Gm11989-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000185009 Gm14214-001 translated_processed_pseudogene Mus_musculus 0 520
ENSMUST00000119589 Gm16071-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000121823 Gm5257-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000184654 Gm14214-002 protein_coding Mus_musculus 0 490
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 490
ENSMUST00000165944 RP24-170M24.1-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000171395 Gm8425-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000122273 Gm12269-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000116081 Gm14853-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000117439 Gm12385-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000118973 Gm15617-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000188170 RP23-248N10.1-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000129972 Gm16304-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000119253 Gm13975-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 342
ENSMUST00000160362 Gm2976-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000172650 Gm7393-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 0 220
ENSMUST00000120008 Gm12036-001 processed_pseudogene Mus_musculus 1e-36 158
ENSMUST00000119680 Gm15702-001 processed_pseudogene Mus_musculus 4e-36 156
ENSMUST00000166414 Gm17097-001 processed_pseudogene Mus_musculus 3e-22 110
ENSMUST00000118404 Gm12713-001 processed_pseudogene Mus_musculus 4e-16 90
ENSMUST00000129673 Rpl7a-005 processed_transcript Mus_musculus 0.00000000000007 82

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