C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000473913 RP11-463O9.1-001 ENSG00000243697 9606 + 16:86525457-86526252 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryTestisENST00000473913
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000473913 0.070±0.00 0.249±0.00 0.140±0.00 0.129±0.08 0.024±0.00 0.047±0.00 0.103±0.00 0.023±0.00 0.111±0.00 0.045±0.01 0.265±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L5 CIL_0008L5_0001 VISTA 16:86096481-86697120
CIL_0008XN CIL_0008XN_0001 VISTA 16:86335014-86936242
CIL_000576 CIL_000576_0002 CGP 16:86510527-86555235

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 808
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 802
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 802
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 791
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 791
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 776
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 774
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 769
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 758
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 752
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 752
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 752
ENSMUST00000161633 Gm5766-001 transcribed_processed_pseudogene Mus_musculus 0 715
ENSMUST00000160520 Gm5766-002 processed_transcript Mus_musculus 0 715
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 0 689
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000121823 Gm5257-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000121278 Gm13726-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000104977 Gm4877-201 protein_coding Mus_musculus 0 671
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 667
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 667
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 660
ENSMUST00000119589 Gm16071-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000117240 Gm11989-001 processed_pseudogene Mus_musculus 0 640
ENSMUST00000119629 Gm11979-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000118749 Gm4909-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 603
ENSMUST00000120236 Gm14141-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000122273 Gm12269-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 597
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000185009 Gm14214-001 translated_processed_pseudogene Mus_musculus 0 584
ENSMUST00000117439 Gm12385-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000187766 RP23-223O13.2-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000171395 Gm8425-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000188170 RP23-248N10.1-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000184654 Gm14214-002 protein_coding Mus_musculus 0 521
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000121692 Rpl7a-ps13-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000118582 Gm14082-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 422
ENSMUST00000172650 Gm7393-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000117903 Gm8097-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000118567 Gm14836-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000119048 Gm15041-001 processed_pseudogene Mus_musculus 2e-24 117

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