C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7a pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000477943 RPL7AP6-001 ENSG00000242071 9606 - 14:69885340-69886140 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000477943
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000477943 0.216±0.00 0.312±0.00 0.146±0.12 0.204±0.10 0.243±0.09 0.191±0.00 0.108±0.00 0.327±0.12 0.896±0.80 0.137±0.06 0.068±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000U1 CIL_0000U1_0001 CGP 14:69775417-70032366
CIL_0002M6 CIL_0002M6_0001 CGP 14:69854131-70189070

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 942
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 937
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 931
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 931
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 931
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 920
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 909
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 893
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 893
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 872
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 863
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 857
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 845
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 837
ENSMUST00000071565 Gm4978-201 protein_coding Mus_musculus 0 833
ENSMUST00000118638 Gm13039-001 processed_pseudogene Mus_musculus 0 828
ENSMUST00000119589 Gm16071-001 processed_pseudogene Mus_musculus 0 817
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 808
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 808
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 793
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 789
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 0 785
ENSMUST00000122355 Gm11760-001 processed_pseudogene Mus_musculus 0 785
ENSMUST00000185999 RP23-16N14.6-001 processed_pseudogene Mus_musculus 0 774
ENSMUST00000184700 Gm7863-001 processed_pseudogene Mus_musculus 0 773
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 769
ENSMUST00000121823 Gm5257-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000119952 Gm15836-001 processed_pseudogene Mus_musculus 0 747
ENSMUST00000119629 Gm11979-001 processed_pseudogene Mus_musculus 0 741
ENSMUST00000117240 Gm11989-001 processed_pseudogene Mus_musculus 0 728
ENSMUST00000165944 RP24-170M24.1-001 processed_pseudogene Mus_musculus 0 726
ENSMUST00000118749 Gm4909-001 processed_pseudogene Mus_musculus 0 726
ENSMUST00000121278 Gm13726-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 713
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 688
ENSMUST00000118291 Gm16166-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000187766 RP23-223O13.2-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 640
ENSMUST00000117827 Gm15515-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000171395 Gm8425-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000118582 Gm14082-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000160362 Gm2976-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 501
ENSMUST00000119253 Gm13975-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000117903 Gm8097-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000177515 Gm20660-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000166414 Gm17097-001 processed_pseudogene Mus_musculus 9.99995e-41 171
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0.00000000000007 82

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