C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 4A class IVA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071135 Tubb4a-201 ENSMUSG00000062591 10090 - 17:57080066-57087782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071135 4.575±2.45 1.357±0.23 1.679±0.73 91.503±60.74 2.601±1.03 3.305±0.52 1.263±0.49 0.761±0.19 0.187±0.12 13.793±0.45 0.418±0.08 2.174±0.68 21.996±13.89 0.027±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061U CIL_00061U_0002 CGP 17:57066056-57087782

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005874 IEA microtubule
GO:0005929 IDA cilium
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0030030 IEA cell projection organization
GO:0033269 IDA internode region of axon
GO:0042995 IDA cell projection
GO:0043025 IDA neuronal cell body
GO:0043209 IDA myelin sheath
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1182
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1162
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1133
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1059
ENSDART00000122495 tubb6-001 protein_coding Danio_rerio 0 874
ENSDART00000135264 tubb6-002 protein_coding Danio_rerio 0 505
ENST00000259818 TUBB2B-001 protein_coding Homo_sapiens 0 1336
ENST00000264071 TUBB4A-001 protein_coding Homo_sapiens 0 1589
ENST00000290377 TUBBP5-002 processed_transcript Homo_sapiens 0 909
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 1319
ENST00000317702 TUBB6-001 protein_coding Homo_sapiens 0 1216
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 1284
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 1345
ENST00000340384 TUBB4B-001 protein_coding Homo_sapiens 0 1293
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 1286
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 1275
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 1286
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 1284
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 1275
ENST00000405796 TUBB3P1-001 processed_pseudogene Homo_sapiens 0 893
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 1275
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 1284
ENST00000417736 TUBB6-002 retained_intron Homo_sapiens 0 1177
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 1275
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 1275
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 1286
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000422534 TUBB8P9-001 unprocessed_pseudogene Homo_sapiens 0 499
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 1275
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 1286
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 1275
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 1275
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 1284
ENST00000430210 TUBB8P10-001 unprocessed_pseudogene Homo_sapiens 0 496
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 1284
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 1284
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 1284
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 1286
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 1286
ENST00000450755 TUBB4AP1-001 processed_pseudogene Homo_sapiens 0 1201
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 1286
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 1284
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 1286
ENST00000473006 TUBB2B-002 processed_transcript Homo_sapiens 0 1280
ENST00000508529 TUBBP5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 909
ENST00000540257 TUBB4A-201 protein_coding Homo_sapiens 0 1589
ENST00000553656 TUBB3-007 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 1260
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 1188
ENST00000555810 TUBB3-004 protein_coding Homo_sapiens 0 684
ENST00000556536 TUBB3-012 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000556565 TUBB3-003 protein_coding Homo_sapiens 0 207
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 1260
ENST00000557490 TUBB3-014 nonsense_mediated_decay Homo_sapiens 0 289
ENST00000563927 TUBB8P7-001 processed_transcript Homo_sapiens 1e-38 165
ENST00000567207 TUBB8P7-002 processed_transcript Homo_sapiens 0 872
ENST00000567960 TUBB8P7-003 polymorphic_pseudogene Homo_sapiens 0 878
ENST00000586810 TUBB6-003 nonsense_mediated_decay Homo_sapiens 0 713
ENST00000590103 TUBB6-008 protein_coding Homo_sapiens 0 859
ENST00000591208 TUBB6-005 protein_coding Homo_sapiens 0 981
ENST00000591463 TUBB6-014 protein_coding Homo_sapiens 0 344
ENST00000594075 TUBB4A-009 protein_coding Homo_sapiens 0 394
ENST00000594276 TUBB4A-010 protein_coding Homo_sapiens 0 375
ENST00000594290 TUBB4A-012 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000595324 TUBB4A-011 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000596291 TUBB4A-014 protein_coding Homo_sapiens 0 424
ENST00000596926 TUBB4A-013 protein_coding Homo_sapiens 0 355
ENST00000597686 TUBB4A-005 protein_coding Homo_sapiens 0 446
ENST00000598006 TUBB4A-008 protein_coding Homo_sapiens 0 422
ENST00000598635 TUBB4A-006 protein_coding Homo_sapiens 0 412
ENST00000600216 TUBB4A-015 protein_coding Homo_sapiens 0 425
ENST00000601152 TUBB4A-007 protein_coding Homo_sapiens 0 483
ENST00000601640 TUBB4A-004 protein_coding Homo_sapiens 0 412
ENST00000604929 TUBB4B-002 retained_intron Homo_sapiens 0 1037

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