C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bf
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356530 HIST1H2BF-001 ENSG00000277224 9606 + 6:26199559-26199939 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356530
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356530 0.402±0.00 0.968±0.00 1.526±0.00 4.091±3.66 6.739±6.64 48.092±0.00 0.369±0.00 3.596±0.00 3.421±3.34 11.390±10.52 0.754±0.67 18.519±25.43 0.187±0.03 0.416±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UD CIL_0000UD_0003 CGP 6:26198851-26199939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 NAS:IEA nucleosome
GO:0002227 IDA innate immune response in mucosa
GO:0003677 NAS:IEA DNA binding
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006334 NAS nucleosome assembly
GO:0019731 IDA antibacterial humoral response
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105106 Hist1h2bf-001 protein_coding Mus_musculus 0 529
ENSMUST00000018246 Hist1h2bc-001 protein_coding Mus_musculus 0 529
ENSMUST00000079251 Hist1h2bg-001 protein_coding Mus_musculus 0 523
ENSMUST00000110476 Hist1h2bm-001 protein_coding Mus_musculus 0 523
ENSMUST00000091709 Hist1h2bn-001 protein_coding Mus_musculus 0 518
ENSMUST00000110467 Hist1h2br-001 protein_coding Mus_musculus 0 518
ENSMUST00000078156 Hist1h2bh-001 protein_coding Mus_musculus 0 518
ENSMUST00000110469 Hist1h2bq-001 protein_coding Mus_musculus 0 518
ENSMUST00000180288 Hist1h2br-201 protein_coding Mus_musculus 0 514
ENSMUST00000091749 Hist1h2bq-201 protein_coding Mus_musculus 0 514
ENSMUST00000051091 Hist1h2be-001 protein_coding Mus_musculus 0 512
ENSMUST00000091704 Hist1h2be-002 protein_coding Mus_musculus 0 512
ENSMUST00000091756 Hist1h2bl-001 protein_coding Mus_musculus 0 512
ENSMUST00000102982 Hist1h2bp-001 protein_coding Mus_musculus 0 507
ENSMUST00000110452 Hist1h2bj-001 protein_coding Mus_musculus 0 507
ENSMUST00000110455 Hist1h2bk-001 protein_coding Mus_musculus 0 505
ENSMUST00000110473 Hist1h2bp-002 protein_coding Mus_musculus 0 503
ENSMUST00000099703 Hist1h2bb-001 protein_coding Mus_musculus 0 484
ENSMUST00000177113 Hist2h2bb-001 protein_coding Mus_musculus 0 440
ENSMUST00000117558 Hist3h2bb-ps-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000078267 Hist3h2ba-001 protein_coding Mus_musculus 0 418
ENSMUST00000090781 Hist2h2be-001 protein_coding Mus_musculus 0 409
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 396
ENSMUST00000052776 Hist1h2ba-001 protein_coding Mus_musculus 0 390
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 385
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 381
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 375
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 351
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 350
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 340
ENSDART00000055913 hist2h2l-001 protein_coding Danio_rerio 0 329
ENSDART00000126724 wu:fe11b02-206 protein_coding Danio_rerio 0 324

Loading