C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1 H2br
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180288 Hist1h2br-201 ENSMUSG00000069303 10090 + 13:21833743-21836665 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverENSMUST00000180288
Transcript ID Bladder Brain Liver
ENSMUST00000180288 1.156±0.00 2.237±0.00 2.674±3.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0002 VISTA 13:21673105-22276611
CIL_0000UD CIL_0000UD_000F CGP 13:21833026-21837530

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 381
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 375
ENSDART00000115210 ano9a-001 protein_coding Danio_rerio 0 374
ENSDART00000114598 ano9a-001 protein_coding Danio_rerio 0 374
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 372
ENSDART00000109751 protein_coding Danio_rerio 0 366
ENSDART00000126590 zgc:173587-201 protein_coding Danio_rerio 0 361
ENSDART00000130784 zgc:173587-202 protein_coding Danio_rerio 0 359
ENSDART00000156508 zgc:173587-001 protein_coding Danio_rerio 0 359
ENSDART00000129255 ano9a-201 protein_coding Danio_rerio 0 357
ENSDART00000156838 ano9a-001 protein_coding Danio_rerio 0 357
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 353
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 348
ENSDART00000050237 zgc:171759-201 protein_coding Danio_rerio 0 348
ENSDART00000155850 zgc:171759-001 protein_coding Danio_rerio 0 348
ENSDART00000102959 si:dkey-261m9.19-201 protein_coding Danio_rerio 0 348
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 342
ENSDART00000157137 si:dkey-261m9.19-001 protein_coding Danio_rerio 0 342
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 340
ENSDART00000146977 zgc:171759-209 protein_coding Danio_rerio 0 337
ENSDART00000152761 zgc:171759-001 protein_coding Danio_rerio 0 337
ENSDART00000146289 zgc:171759-208 protein_coding Danio_rerio 0 335
ENSDART00000154655 zgc:171759-001 protein_coding Danio_rerio 0 335
ENSDART00000114767 CABZ01086354.1-201 protein_coding Danio_rerio 0 326
ENSDART00000113626 zgc:171759-205 protein_coding Danio_rerio 0 326
ENSDART00000114327 wu:fe11b02-201 protein_coding Danio_rerio 0 324
ENSDART00000073457 zgc:194989-001 protein_coding Danio_rerio 0 322
ENSDART00000123848 wu:fe11b02-205 protein_coding Danio_rerio 0 303
ENSDART00000126724 wu:fe11b02-206 protein_coding Danio_rerio 0 298
ENSDART00000122306 wu:fe11b02-204 protein_coding Danio_rerio 0 292
ENST00000289316 HIST1H2BD-001 protein_coding Homo_sapiens 0 520
ENST00000314332 HIST1H2BC-003 protein_coding Homo_sapiens 0 536
ENST00000339812 HIST1H2BJ-003 protein_coding Homo_sapiens 0 494
ENST00000356530 HIST1H2BF-001 protein_coding Homo_sapiens 0 514
ENST00000356950 HIST1H2BK-001 protein_coding Homo_sapiens 0 538
ENST00000369155 HIST2H2BE-001 protein_coding Homo_sapiens 0 534
ENST00000369160 HIST2H2BE-201 protein_coding Homo_sapiens 0 532
ENST00000369167 HIST2H2BF-001 protein_coding Homo_sapiens 0 520
ENST00000369177 HIST1H2BPS1-001 processed_pseudogene Homo_sapiens 0 303
ENST00000369385 HIST2H2BD-001 processed_pseudogene Homo_sapiens 0 520
ENST00000377401 HIST1H2BL-001 protein_coding Homo_sapiens 0 568
ENST00000377733 HIST1H2BI-001 protein_coding Homo_sapiens 0 525
ENST00000377777 HIST1H2BD-002 protein_coding Homo_sapiens 0 520
ENST00000396980 HIST1H2BN-201 protein_coding Homo_sapiens 0 564
ENST00000396984 HIST1H2BC-002 protein_coding Homo_sapiens 0 536
ENST00000412169 HIST2H2BA-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 492
ENST00000419683 HIST1H2BPS3-001 processed_pseudogene Homo_sapiens 0 307
ENST00000430394 HIST2H2BA-002 processed_transcript Homo_sapiens 0 492
ENST00000436555 HIST3H2BA-001 unitary_pseudogene Homo_sapiens 0 483
ENST00000449108 HIST2H2BB-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 503
ENST00000449538 HIST1H2BN-002 nonsense_mediated_decay Homo_sapiens 0 568
ENST00000464664 CH507-42P11.1-001 processed_pseudogene Homo_sapiens 0 527
ENST00000465850 RP11-274J15.2-001 processed_pseudogene Homo_sapiens 0 431
ENST00000469483 HIST2H2BF-002 processed_transcript Homo_sapiens 0 520
ENST00000498492 HIST2H2BC-001 processed_pseudogene Homo_sapiens 0 521
ENST00000545683 HIST2H2BF-201 protein_coding Homo_sapiens 0 520
ENST00000599962 H2BFS-001 protein_coding Homo_sapiens 0 531
ENST00000606613 HIST1H2BN-003 protein_coding Homo_sapiens 0 568
ENST00000607124 HIST1H2BJ-001 protein_coding Homo_sapiens 0 494
ENST00000609585 HIST2H2BB-002 processed_transcript Homo_sapiens 0 503
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 568
ENST00000614097 HIST1H2BE-001 protein_coding Homo_sapiens 0 560
ENST00000616182 HIST1H2BO-001 protein_coding Homo_sapiens 0 520
ENST00000619466 HIST1H2BH-001 protein_coding Homo_sapiens 0 514
ENST00000620438 HIST3H2BB-001 protein_coding Homo_sapiens 0 488
ENST00000620458 HIST2H2BF-003 processed_transcript Homo_sapiens 8.99999e-40 167
ENST00000621112 HIST1H2BM-001 protein_coding Homo_sapiens 0 453

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