C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 2, H2be
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090781 Hist2h2be-001 ENSMUSG00000068854 10090 + 3:96221119-96223738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090781
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090781 3.042±0.64 7.156±0.45 3.787±0.28 4.493±3.00 4.301±0.36 4.363±0.37 3.750±0.14 3.345±0.27 5.489±4.34 4.232±0.19 2.850±0.92 5.892±1.42 0.530±0.36 6.646±2.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UD CIL_0000UD_0009 CGP 3:96220361-96223738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0002227 IEA innate immune response in mucosa
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005654 TAS nucleoplasm
GO:0019731 IEA antibacterial humoral response
GO:0046982 IEA protein heterodimerization activity
GO:0050830 IEA defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 344
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 333
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 327
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 316
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 300
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 298
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 283
ENST00000289316 HIST1H2BD-001 protein_coding Homo_sapiens 0 409
ENST00000314332 HIST1H2BC-003 protein_coding Homo_sapiens 0 431
ENST00000339812 HIST1H2BJ-003 protein_coding Homo_sapiens 0 420
ENST00000356530 HIST1H2BF-001 protein_coding Homo_sapiens 0 409
ENST00000356950 HIST1H2BK-001 protein_coding Homo_sapiens 0 409
ENST00000369155 HIST2H2BE-001 protein_coding Homo_sapiens 0 466
ENST00000369160 HIST2H2BE-201 protein_coding Homo_sapiens 0 457
ENST00000369167 HIST2H2BF-001 protein_coding Homo_sapiens 0 425
ENST00000369385 HIST2H2BD-001 processed_pseudogene Homo_sapiens 0 427
ENST00000377401 HIST1H2BL-001 protein_coding Homo_sapiens 0 446
ENST00000377733 HIST1H2BI-001 protein_coding Homo_sapiens 0 409
ENST00000377777 HIST1H2BD-002 protein_coding Homo_sapiens 0 409
ENST00000396980 HIST1H2BN-201 protein_coding Homo_sapiens 0 416
ENST00000396984 HIST1H2BC-002 protein_coding Homo_sapiens 0 433
ENST00000412169 HIST2H2BA-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 398
ENST00000419683 HIST1H2BPS3-001 processed_pseudogene Homo_sapiens 0 226
ENST00000430394 HIST2H2BA-002 processed_transcript Homo_sapiens 0 394
ENST00000436555 HIST3H2BA-001 unitary_pseudogene Homo_sapiens 0 411
ENST00000449108 HIST2H2BB-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 398
ENST00000449538 HIST1H2BN-002 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000464664 CH507-42P11.1-001 processed_pseudogene Homo_sapiens 0 394
ENST00000469483 HIST2H2BF-002 processed_transcript Homo_sapiens 0 422
ENST00000498492 HIST2H2BC-001 processed_pseudogene Homo_sapiens 0 427
ENST00000545683 HIST2H2BF-201 protein_coding Homo_sapiens 0 424
ENST00000599962 H2BFS-001 protein_coding Homo_sapiens 0 399
ENST00000606613 HIST1H2BN-003 protein_coding Homo_sapiens 0 422
ENST00000607124 HIST1H2BJ-001 protein_coding Homo_sapiens 0 420
ENST00000609585 HIST2H2BB-002 processed_transcript Homo_sapiens 0 396
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 424
ENST00000614097 HIST1H2BE-001 protein_coding Homo_sapiens 0 416
ENST00000620438 HIST3H2BB-001 protein_coding Homo_sapiens 0 438

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