C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bk
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110455 Hist1h2bk-001 ENSMUSG00000062727 10090 + 13:22035870-22036345 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110455
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110455 1.529±0.91 0.260±0.17 0.930±0.85 6.611±1.62 1.792±1.04 4.702±0.71 0.108±0.00 0.924±0.13 5.657±8.34 0.258±0.18 0.199±0.00 5.531±2.26 1.598±2.36 2.581±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0002 VISTA 13:21673105-22276611
CIL_0000UD CIL_0000UD_000D CGP 13:22035164-22036345

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005654 TAS nucleoplasm
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 370
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 364
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 363
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 342
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 340
ENST00000289316 HIST1H2BD-001 protein_coding Homo_sapiens 0 510
ENST00000314332 HIST1H2BC-003 protein_coding Homo_sapiens 0 532
ENST00000339812 HIST1H2BJ-003 protein_coding Homo_sapiens 0 494
ENST00000356530 HIST1H2BF-001 protein_coding Homo_sapiens 0 505
ENST00000356950 HIST1H2BK-001 protein_coding Homo_sapiens 0 538
ENST00000369155 HIST2H2BE-001 protein_coding Homo_sapiens 0 527
ENST00000369160 HIST2H2BE-201 protein_coding Homo_sapiens 0 523
ENST00000369167 HIST2H2BF-001 protein_coding Homo_sapiens 0 516
ENST00000369177 HIST1H2BPS1-001 processed_pseudogene Homo_sapiens 0 313
ENST00000369385 HIST2H2BD-001 processed_pseudogene Homo_sapiens 0 512
ENST00000377401 HIST1H2BL-001 protein_coding Homo_sapiens 0 560
ENST00000377733 HIST1H2BI-001 protein_coding Homo_sapiens 0 510
ENST00000377777 HIST1H2BD-002 protein_coding Homo_sapiens 0 518
ENST00000396980 HIST1H2BN-201 protein_coding Homo_sapiens 0 540
ENST00000396984 HIST1H2BC-002 protein_coding Homo_sapiens 0 556
ENST00000412169 HIST2H2BA-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 488
ENST00000419683 HIST1H2BPS3-001 processed_pseudogene Homo_sapiens 0 292
ENST00000430394 HIST2H2BA-002 processed_transcript Homo_sapiens 0 483
ENST00000436555 HIST3H2BA-001 unitary_pseudogene Homo_sapiens 0 486
ENST00000449108 HIST2H2BB-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 499
ENST00000449538 HIST1H2BN-002 nonsense_mediated_decay Homo_sapiens 0 542
ENST00000464664 CH507-42P11.1-001 processed_pseudogene Homo_sapiens 0 521
ENST00000465850 RP11-274J15.2-001 processed_pseudogene Homo_sapiens 0 442
ENST00000469483 HIST2H2BF-002 processed_transcript Homo_sapiens 0 510
ENST00000498492 HIST2H2BC-001 processed_pseudogene Homo_sapiens 0 514
ENST00000545683 HIST2H2BF-201 protein_coding Homo_sapiens 0 512
ENST00000599962 H2BFS-001 protein_coding Homo_sapiens 0 536
ENST00000606613 HIST1H2BN-003 protein_coding Homo_sapiens 0 540
ENST00000607124 HIST1H2BJ-001 protein_coding Homo_sapiens 0 497
ENST00000609585 HIST2H2BB-002 processed_transcript Homo_sapiens 0 496
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 542
ENST00000614097 HIST1H2BE-001 protein_coding Homo_sapiens 0 553
ENST00000616182 HIST1H2BO-001 protein_coding Homo_sapiens 0 507
ENST00000619466 HIST1H2BH-001 protein_coding Homo_sapiens 0 499
ENST00000620438 HIST3H2BB-001 protein_coding Homo_sapiens 0 481
ENST00000620458 HIST2H2BF-003 processed_transcript Homo_sapiens 5e-37 158
ENST00000621112 HIST1H2BM-001 protein_coding Homo_sapiens 0 451

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