C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2ba
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052776 Hist1h2ba-001 ENSMUSG00000050799 10090 - 13:23933773-23934156 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainHeartKidneyLiverLungPlacentaTestisENSMUST00000052776
Transcript ID Adrenal Bladder Brain Heart Kidney Liver Lung Placenta Testis
ENSMUST00000052776 9.541±0.00 0.662±0.59 0.585±0.00 0.147±0.00 0.276±0.08 1.383±1.57 1.668±0.00 0.021±0.00 108.897±18.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LK CIL_0000LK_0005 CGP 13:23933773-23934851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IDA nucleosome
GO:0005654 TAS nucleoplasm
GO:0006334 IMP nucleosome assembly
GO:0006337 IMP nucleosome disassembly
GO:0006954 IMP inflammatory response
GO:0019897 IDA extrinsic component of plasma membrane
GO:0031639 IMP plasminogen activation
GO:0035093 IMP spermatogenesis, exchange of chromosomal proteins
GO:0046982 IEA protein heterodimerization activity
GO:0051099 IMP positive regulation of binding
GO:0071674 IMP mononuclear cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 331
ENSDART00000109751 protein_coding Danio_rerio 0 327
ENSDART00000115210 ano9a-001 protein_coding Danio_rerio 0 322
ENSDART00000114598 ano9a-001 protein_coding Danio_rerio 0 322
ENSDART00000155850 zgc:171759-001 protein_coding Danio_rerio 0 316
ENSDART00000050237 zgc:171759-201 protein_coding Danio_rerio 0 315
ENSDART00000156508 zgc:173587-001 protein_coding Danio_rerio 0 311
ENSDART00000156838 ano9a-001 protein_coding Danio_rerio 0 311
ENSDART00000126590 zgc:173587-201 protein_coding Danio_rerio 0 307
ENSDART00000130784 zgc:173587-202 protein_coding Danio_rerio 0 307
ENSDART00000129255 ano9a-201 protein_coding Danio_rerio 0 307
ENSDART00000152761 zgc:171759-001 protein_coding Danio_rerio 0 300
ENSDART00000157137 si:dkey-261m9.19-001 protein_coding Danio_rerio 0 300
ENSDART00000102959 si:dkey-261m9.19-201 protein_coding Danio_rerio 0 298
ENSDART00000146977 zgc:171759-209 protein_coding Danio_rerio 0 296
ENSDART00000114767 CABZ01086354.1-201 protein_coding Danio_rerio 0 291
ENSDART00000114327 wu:fe11b02-201 protein_coding Danio_rerio 0 283
ENSDART00000073457 zgc:194989-001 protein_coding Danio_rerio 0 283
ENSDART00000154655 zgc:171759-001 protein_coding Danio_rerio 0 283
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 279
ENSDART00000146289 zgc:171759-208 protein_coding Danio_rerio 0 279
ENSDART00000113626 zgc:171759-205 protein_coding Danio_rerio 0 268
ENSDART00000122306 wu:fe11b02-204 protein_coding Danio_rerio 0 263
ENSDART00000126724 wu:fe11b02-206 protein_coding Danio_rerio 0 246
ENSDART00000123848 wu:fe11b02-205 protein_coding Danio_rerio 0 243
ENST00000289316 HIST1H2BD-001 protein_coding Homo_sapiens 0 379
ENST00000314332 HIST1H2BC-003 protein_coding Homo_sapiens 0 385
ENST00000339812 HIST1H2BJ-003 protein_coding Homo_sapiens 0 357
ENST00000356530 HIST1H2BF-001 protein_coding Homo_sapiens 0 390
ENST00000356950 HIST1H2BK-001 protein_coding Homo_sapiens 0 405
ENST00000369155 HIST2H2BE-001 protein_coding Homo_sapiens 0 416
ENST00000369160 HIST2H2BE-201 protein_coding Homo_sapiens 0 411
ENST00000369167 HIST2H2BF-001 protein_coding Homo_sapiens 0 399
ENST00000369177 HIST1H2BPS1-001 processed_pseudogene Homo_sapiens 0 329
ENST00000369385 HIST2H2BD-001 processed_pseudogene Homo_sapiens 0 412
ENST00000377401 HIST1H2BL-001 protein_coding Homo_sapiens 0 429
ENST00000377777 HIST1H2BD-002 protein_coding Homo_sapiens 0 379
ENST00000396980 HIST1H2BN-201 protein_coding Homo_sapiens 0 431
ENST00000396984 HIST1H2BC-002 protein_coding Homo_sapiens 0 385
ENST00000412169 HIST2H2BA-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 388
ENST00000419683 HIST1H2BPS3-001 processed_pseudogene Homo_sapiens 0 250
ENST00000430394 HIST2H2BA-002 processed_transcript Homo_sapiens 0 385
ENST00000436555 HIST3H2BA-001 unitary_pseudogene Homo_sapiens 0 390
ENST00000449108 HIST2H2BB-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 394
ENST00000449538 HIST1H2BN-002 nonsense_mediated_decay Homo_sapiens 0 438
ENST00000464664 CH507-42P11.1-001 processed_pseudogene Homo_sapiens 0 398
ENST00000465850 RP11-274J15.2-001 processed_pseudogene Homo_sapiens 0 333
ENST00000469483 HIST2H2BF-002 processed_transcript Homo_sapiens 0 396
ENST00000498492 HIST2H2BC-001 processed_pseudogene Homo_sapiens 0 412
ENST00000545683 HIST2H2BF-201 protein_coding Homo_sapiens 0 399
ENST00000599962 H2BFS-001 protein_coding Homo_sapiens 0 399
ENST00000606613 HIST1H2BN-003 protein_coding Homo_sapiens 0 433
ENST00000607124 HIST1H2BJ-001 protein_coding Homo_sapiens 0 357
ENST00000609585 HIST2H2BB-002 processed_transcript Homo_sapiens 0 394
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 438
ENST00000614097 HIST1H2BE-001 protein_coding Homo_sapiens 0 418
ENST00000616182 HIST1H2BO-001 protein_coding Homo_sapiens 0 431
ENST00000619466 HIST1H2BH-001 protein_coding Homo_sapiens 0 398
ENST00000620458 HIST2H2BF-003 processed_transcript Homo_sapiens 2e-40 169
ENST00000621112 HIST1H2BM-001 protein_coding Homo_sapiens 0 339

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