C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bj
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110452 Hist1h2bj-001 ENSMUSG00000069300 10090 + 13:22043214-22043676 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110452
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110452 2.015±0.74 0.695±0.27 0.835±0.55 8.013±0.20 1.783±0.57 4.197±0.95 0.100±0.01 0.431±0.21 8.429±8.85 0.688±0.15 0.346±0.12 5.153±1.63 5.922±4.80 3.768±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0002 VISTA 13:21673105-22276611
CIL_0000UD CIL_0000UD_000C CGP 13:22042460-22043676

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005654 TAS nucleoplasm
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 388
ENSDART00000115210 ano9a-001 protein_coding Danio_rerio 0 383
ENSDART00000114598 ano9a-001 protein_coding Danio_rerio 0 383
ENSDART00000109751 protein_coding Danio_rerio 0 375
ENSDART00000156508 zgc:173587-001 protein_coding Danio_rerio 0 374
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 374
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 368
ENSDART00000156838 ano9a-001 protein_coding Danio_rerio 0 366
ENSDART00000129255 ano9a-201 protein_coding Danio_rerio 0 363
ENSDART00000155850 zgc:171759-001 protein_coding Danio_rerio 0 355
ENSDART00000126590 zgc:173587-201 protein_coding Danio_rerio 0 353
ENSDART00000130784 zgc:173587-202 protein_coding Danio_rerio 0 353
ENSDART00000050237 zgc:171759-201 protein_coding Danio_rerio 0 353
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 351
ENSDART00000157137 si:dkey-261m9.19-001 protein_coding Danio_rerio 0 351
ENSDART00000102959 si:dkey-261m9.19-201 protein_coding Danio_rerio 0 350
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 346
ENSDART00000152761 zgc:171759-001 protein_coding Danio_rerio 0 340
ENSDART00000146977 zgc:171759-209 protein_coding Danio_rerio 0 337
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 333
ENSDART00000154655 zgc:171759-001 protein_coding Danio_rerio 0 333
ENSDART00000114767 CABZ01086354.1-201 protein_coding Danio_rerio 0 331
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 331
ENSDART00000073457 zgc:194989-001 protein_coding Danio_rerio 0 329
ENSDART00000146289 zgc:171759-208 protein_coding Danio_rerio 0 329
ENSDART00000113626 zgc:171759-205 protein_coding Danio_rerio 0 326
ENSDART00000114327 wu:fe11b02-201 protein_coding Danio_rerio 0 316
ENSDART00000123848 wu:fe11b02-205 protein_coding Danio_rerio 0 300
ENSDART00000126724 wu:fe11b02-206 protein_coding Danio_rerio 0 287
ENSDART00000122306 wu:fe11b02-204 protein_coding Danio_rerio 0 287
ENST00000289316 HIST1H2BD-001 protein_coding Homo_sapiens 0 512
ENST00000314332 HIST1H2BC-003 protein_coding Homo_sapiens 0 529
ENST00000339812 HIST1H2BJ-003 protein_coding Homo_sapiens 0 484
ENST00000356530 HIST1H2BF-001 protein_coding Homo_sapiens 0 507
ENST00000356950 HIST1H2BK-001 protein_coding Homo_sapiens 0 529
ENST00000369155 HIST2H2BE-001 protein_coding Homo_sapiens 0 529
ENST00000369160 HIST2H2BE-201 protein_coding Homo_sapiens 0 523
ENST00000369167 HIST2H2BF-001 protein_coding Homo_sapiens 0 512
ENST00000369177 HIST1H2BPS1-001 processed_pseudogene Homo_sapiens 0 313
ENST00000369385 HIST2H2BD-001 processed_pseudogene Homo_sapiens 0 518
ENST00000377401 HIST1H2BL-001 protein_coding Homo_sapiens 0 588
ENST00000377733 HIST1H2BI-001 protein_coding Homo_sapiens 0 518
ENST00000377777 HIST1H2BD-002 protein_coding Homo_sapiens 0 518
ENST00000396980 HIST1H2BN-201 protein_coding Homo_sapiens 0 568
ENST00000396984 HIST1H2BC-002 protein_coding Homo_sapiens 0 529
ENST00000412169 HIST2H2BA-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 484
ENST00000419683 HIST1H2BPS3-001 processed_pseudogene Homo_sapiens 0 298
ENST00000430394 HIST2H2BA-002 processed_transcript Homo_sapiens 0 481
ENST00000436555 HIST3H2BA-001 unitary_pseudogene Homo_sapiens 0 510
ENST00000449108 HIST2H2BB-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 496
ENST00000449538 HIST1H2BN-002 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000464664 CH507-42P11.1-001 processed_pseudogene Homo_sapiens 0 516
ENST00000465850 RP11-274J15.2-001 processed_pseudogene Homo_sapiens 0 422
ENST00000469483 HIST2H2BF-002 processed_transcript Homo_sapiens 0 508
ENST00000498492 HIST2H2BC-001 processed_pseudogene Homo_sapiens 0 520
ENST00000545683 HIST2H2BF-201 protein_coding Homo_sapiens 0 512
ENST00000599962 H2BFS-001 protein_coding Homo_sapiens 0 520
ENST00000606613 HIST1H2BN-003 protein_coding Homo_sapiens 0 566
ENST00000607124 HIST1H2BJ-001 protein_coding Homo_sapiens 0 484
ENST00000609585 HIST2H2BB-002 processed_transcript Homo_sapiens 0 496
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 575
ENST00000614097 HIST1H2BE-001 protein_coding Homo_sapiens 0 551
ENST00000616182 HIST1H2BO-001 protein_coding Homo_sapiens 0 516
ENST00000619466 HIST1H2BH-001 protein_coding Homo_sapiens 0 508
ENST00000620438 HIST3H2BB-001 protein_coding Homo_sapiens 0 508
ENST00000620458 HIST2H2BF-003 processed_transcript Homo_sapiens 2e-40 169
ENST00000621112 HIST1H2BM-001 protein_coding Homo_sapiens 0 449

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