C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 3 class III pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405796 TUBB3P1-001 ENSG00000220418 9606 + 6:89301783-89303114 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonTestisENST00000405796
Transcript ID Adipose Bladder Brain Colon Testis
ENST00000405796 0.016±0.00 0.388±0.00 0.107±0.00 0.018±0.00 0.034±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BT CIL_0006BT_0002 CGP 6:89257208-89352848

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 1338
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1051
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 989
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 968
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 893
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 806
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 774
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 760
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 754
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 754
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 736
ENSMUST00000187481 RP23-8J15.8-001 processed_pseudogene Mus_musculus 0 725
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 710
ENSMUST00000160140 Gm16165-001 processed_pseudogene Mus_musculus 0 401
ENSDART00000147110 tubb4b-002 processed_transcript Danio_rerio 0 364
ENSDART00000134744 tubb4b-003 processed_transcript Danio_rerio 0 344

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