C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21 pseudogene 65
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406094 RPL21P65-001 ENSG00000216977 9606 + 6:106642463-106642928 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000406094
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000406094 0.028±0.00 0.296±0.00 0.105±0.08 0.082±0.00 0.028±0.00 0.515±0.34 1.516±0.00 0.313±0.00 0.457±0.00 0.909±0.75 0.180±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PN CIL_0008PN_0001 VISTA 6:106445731-107046322
CIL_00085F CIL_00085F_0001 VISTA 6:106472954-107074777
CIL_0001OX CIL_0001OX_0002 CGP 6:106571971-106668417

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 366
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 366
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 366
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 350
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 348
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 342
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 337
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 327
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 316
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 305
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 215
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 1e-33 147
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 1e-33 147
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 2e-26 122
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 6e-17 92
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 0.00000000002 73

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