C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21, pseudogene 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071237 Rpl21-ps10-201 ENSMUSG00000064315 10090 - 3:38107440-38107922 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverMuscleOvaryPlacentaTestisENSMUST00000071237
Transcript ID Adipose Bladder Brain Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000071237 0.125±0.00 0.046±0.00 0.221±0.00 0.263±0.06 0.126±0.15 0.128±0.00 0.105±0.01 0.279±0.12 0.198±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099R CIL_00099R_0002 VISTA 3:37594700-38198826

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247219 TBPL2-001 protein_coding Homo_sapiens 0 254
ENST00000272274 RPL21-003 protein_coding Homo_sapiens 0 582
ENST00000311549 RPL21-001 protein_coding Homo_sapiens 0 582
ENST00000319826 RPL21-004 protein_coding Homo_sapiens 0 582
ENST00000326092 RPL21-005 protein_coding Homo_sapiens 0 582
ENST00000395517 RPL21P3-001 processed_pseudogene Homo_sapiens 0 472
ENST00000396599 RPL21P75-001 processed_pseudogene Homo_sapiens 0 577
ENST00000397467 RPL21P17-001 processed_pseudogene Homo_sapiens 0 481
ENST00000403842 RP11-203F10.6-001 processed_pseudogene Homo_sapiens 0 538
ENST00000416102 AC017079.4-001 processed_pseudogene Homo_sapiens 0 390
ENST00000416622 RP11-329A14.2-001 processed_pseudogene Homo_sapiens 0 401
ENST00000417077 RP11-339A7.1-001 processed_pseudogene Homo_sapiens 0 468
ENST00000418441 RP11-151F5.2-001 processed_pseudogene Homo_sapiens 0 527
ENST00000423231 RP11-26H16.1-001 processed_pseudogene Homo_sapiens 0 516
ENST00000432935 RP5-1068B5.1-001 processed_pseudogene Homo_sapiens 0.00000004 62
ENST00000433345 RPL21P110-001 processed_pseudogene Homo_sapiens 0 283
ENST00000433493 RP5-859M6.1-001 processed_pseudogene Homo_sapiens 0 307
ENST00000441274 RP11-490K7.1-001 processed_pseudogene Homo_sapiens 0 411
ENST00000443666 RPL21P133-001 processed_pseudogene Homo_sapiens 0 359
ENST00000453468 RPL21P134-001 processed_pseudogene Homo_sapiens 0 521
ENST00000454675 AC092155.1-001 processed_pseudogene Homo_sapiens 0 516
ENST00000459863 RPL21P41-001 processed_pseudogene Homo_sapiens 0 289
ENST00000461690 RPL21-007 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000463605 RPL21P39-001 processed_pseudogene Homo_sapiens 0 521
ENST00000465083 RPL21P8-001 processed_pseudogene Homo_sapiens 0 252
ENST00000465295 RP11-30K9.1-001 processed_pseudogene Homo_sapiens 0 477
ENST00000466550 RPL21-006 retained_intron Homo_sapiens 0 333
ENST00000472093 RP11-267J23.1-001 processed_pseudogene Homo_sapiens 0 337
ENST00000472975 RP11-112N19.2-001 processed_pseudogene Homo_sapiens 0 484
ENST00000477341 RP11-734J24.1-001 processed_pseudogene Homo_sapiens 0 523
ENST00000479171 RPL21P6-001 processed_pseudogene Homo_sapiens 0 254
ENST00000480465 RP11-492M23.2-001 processed_pseudogene Homo_sapiens 0 547
ENST00000482506 RPL21P116-001 processed_pseudogene Homo_sapiens 0 516
ENST00000482905 RPL21P120-001 processed_pseudogene Homo_sapiens 0 486
ENST00000484462 RPL21P119-001 processed_pseudogene Homo_sapiens 0 573
ENST00000485217 CTD-2182N23.1-001 processed_pseudogene Homo_sapiens 0 331
ENST00000485945 RP11-613M5.2-001 processed_pseudogene Homo_sapiens 0 553
ENST00000487382 CTD-2158P22.1-001 processed_pseudogene Homo_sapiens 0 396
ENST00000488289 RP13-585F24.1-001 processed_pseudogene Homo_sapiens 0 544
ENST00000491732 RPL21P129-001 processed_pseudogene Homo_sapiens 0 409
ENST00000493317 RPL21-009 protein_coding Homo_sapiens 0 459
ENST00000493466 RP11-9D8.1-001 processed_pseudogene Homo_sapiens 0 483
ENST00000495531 RP11-572P18.1-001 processed_pseudogene Homo_sapiens 0 582
ENST00000496412 CTD-2290C23.2-001 processed_pseudogene Homo_sapiens 0 444
ENST00000497298 RPL21P131-001 processed_pseudogene Homo_sapiens 0 505
ENST00000600955 RP1-228H13.1-001 processed_pseudogene Homo_sapiens 0 523

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