C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 8724
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080061 Gm8724-201 ENSMUSG00000058700 10090 - 6:128530918-128531304 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080061
Transcript ID Adipose Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080061 0.168±0.00 0.144±0.11 0.153±0.00 0.394±0.00 0.330±0.41 0.196±0.00 0.198±0.01 0.124±0.00 0.139±0.07 0.257±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247219 TBPL2-001 protein_coding Homo_sapiens 3e-26 124
ENST00000272274 RPL21-003 protein_coding Homo_sapiens 0 449
ENST00000311549 RPL21-001 protein_coding Homo_sapiens 0 449
ENST00000319826 RPL21-004 protein_coding Homo_sapiens 0 449
ENST00000326092 RPL21-005 protein_coding Homo_sapiens 0 449
ENST00000395517 RPL21P3-001 processed_pseudogene Homo_sapiens 0 372
ENST00000396599 RPL21P75-001 processed_pseudogene Homo_sapiens 0 444
ENST00000397467 RPL21P17-001 processed_pseudogene Homo_sapiens 0 370
ENST00000401418 RPL21P28-001 processed_pseudogene Homo_sapiens 0 438
ENST00000401964 RP11-569A2.2-001 processed_pseudogene Homo_sapiens 0.000000000000004 84
ENST00000403842 RP11-203F10.6-001 processed_pseudogene Homo_sapiens 0 414
ENST00000413857 RPL21P108-001 processed_pseudogene Homo_sapiens 0 196
ENST00000416102 AC017079.4-001 processed_pseudogene Homo_sapiens 0 307
ENST00000416622 RP11-329A14.2-001 processed_pseudogene Homo_sapiens 0 318
ENST00000418441 RP11-151F5.2-001 processed_pseudogene Homo_sapiens 0 411
ENST00000418851 AC008280.1-001 processed_pseudogene Homo_sapiens 0 267
ENST00000423231 RP11-26H16.1-001 processed_pseudogene Homo_sapiens 0 399
ENST00000432935 RP5-1068B5.1-001 processed_pseudogene Homo_sapiens 0.00000004 62
ENST00000433345 RPL21P110-001 processed_pseudogene Homo_sapiens 0 187
ENST00000433493 RP5-859M6.1-001 processed_pseudogene Homo_sapiens 0 226
ENST00000441274 RP11-490K7.1-001 processed_pseudogene Homo_sapiens 0 303
ENST00000443666 RPL21P133-001 processed_pseudogene Homo_sapiens 0 276
ENST00000453468 RPL21P134-001 processed_pseudogene Homo_sapiens 0 405
ENST00000454675 AC092155.1-001 processed_pseudogene Homo_sapiens 0 401
ENST00000459863 RPL21P41-001 processed_pseudogene Homo_sapiens 0 207
ENST00000461690 RPL21-007 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000463339 RP11-690D19.1-001 processed_pseudogene Homo_sapiens 0 292
ENST00000463605 RPL21P39-001 processed_pseudogene Homo_sapiens 0 416
ENST00000465083 RPL21P8-001 processed_pseudogene Homo_sapiens 7e-32 141
ENST00000465295 RP11-30K9.1-001 processed_pseudogene Homo_sapiens 0 350
ENST00000466550 RPL21-006 retained_intron Homo_sapiens 0 206
ENST00000472093 RP11-267J23.1-001 processed_pseudogene Homo_sapiens 0 220
ENST00000472975 RP11-112N19.2-001 processed_pseudogene Homo_sapiens 0 374
ENST00000473558 RPL21-002 retained_intron Homo_sapiens 0.0000007 58
ENST00000477341 RP11-734J24.1-001 processed_pseudogene Homo_sapiens 0 390
ENST00000479171 RPL21P6-001 processed_pseudogene Homo_sapiens 7e-27 124
ENST00000480465 RP11-492M23.2-001 processed_pseudogene Homo_sapiens 0 433
ENST00000482506 RPL21P116-001 processed_pseudogene Homo_sapiens 0 405
ENST00000482905 RPL21P120-001 processed_pseudogene Homo_sapiens 0 361
ENST00000484462 RPL21P119-001 processed_pseudogene Homo_sapiens 0 440
ENST00000485217 CTD-2182N23.1-001 processed_pseudogene Homo_sapiens 0 239
ENST00000485945 RP11-613M5.2-001 processed_pseudogene Homo_sapiens 0 436
ENST00000487382 CTD-2158P22.1-001 processed_pseudogene Homo_sapiens 0 326
ENST00000488289 RP13-585F24.1-001 processed_pseudogene Homo_sapiens 0 427
ENST00000491435 RP11-50D9.1-001 processed_pseudogene Homo_sapiens 0 436
ENST00000491732 RPL21P129-001 processed_pseudogene Homo_sapiens 0 326
ENST00000493317 RPL21-009 protein_coding Homo_sapiens 0 331
ENST00000493466 RP11-9D8.1-001 processed_pseudogene Homo_sapiens 0 372
ENST00000495531 RP11-572P18.1-001 processed_pseudogene Homo_sapiens 0 449
ENST00000496412 CTD-2290C23.2-001 processed_pseudogene Homo_sapiens 0 385
ENST00000497298 RPL21P131-001 processed_pseudogene Homo_sapiens 0 388
ENST00000515262 HSPA4L-005 processed_transcript Homo_sapiens 5e-29 132
ENST00000600955 RP1-228H13.1-001 processed_pseudogene Homo_sapiens 0 398

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