C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 16415
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080097 Gm16415-001 ENSMUSG00000056849 10090 + 18:42441019-42441507 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverOvaryPlacentaTestisENSMUST00000080097
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Ovary Placenta Testis
ENSMUST00000080097 0.175±0.09 0.116±0.00 0.093±0.07 0.126±0.00 0.235±0.00 0.099±0.00 0.107±0.06 0.156±0.07 0.160±0.06 0.378±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AK CIL_0001AK_0002 CGP 18:42394539-42575551

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247219 TBPL2-001 protein_coding Homo_sapiens 0 226
ENST00000272274 RPL21-003 protein_coding Homo_sapiens 0 532
ENST00000311549 RPL21-001 protein_coding Homo_sapiens 0 532
ENST00000319826 RPL21-004 protein_coding Homo_sapiens 0 532
ENST00000326092 RPL21-005 protein_coding Homo_sapiens 0 532
ENST00000395517 RPL21P3-001 processed_pseudogene Homo_sapiens 0 427
ENST00000396599 RPL21P75-001 processed_pseudogene Homo_sapiens 0 527
ENST00000403842 RP11-203F10.6-001 processed_pseudogene Homo_sapiens 0 488
ENST00000416102 AC017079.4-001 processed_pseudogene Homo_sapiens 0 351
ENST00000416622 RP11-329A14.2-001 processed_pseudogene Homo_sapiens 0 351
ENST00000417077 RP11-339A7.1-001 processed_pseudogene Homo_sapiens 0 424
ENST00000418441 RP11-151F5.2-001 processed_pseudogene Homo_sapiens 0 477
ENST00000423231 RP11-26H16.1-001 processed_pseudogene Homo_sapiens 0 466
ENST00000433345 RPL21P110-001 processed_pseudogene Homo_sapiens 0 250
ENST00000433493 RP5-859M6.1-001 processed_pseudogene Homo_sapiens 0 279
ENST00000441274 RP11-490K7.1-001 processed_pseudogene Homo_sapiens 0 372
ENST00000443666 RPL21P133-001 processed_pseudogene Homo_sapiens 0 309
ENST00000453468 RPL21P134-001 processed_pseudogene Homo_sapiens 0 472
ENST00000454675 AC092155.1-001 processed_pseudogene Homo_sapiens 0 466
ENST00000459863 RPL21P41-001 processed_pseudogene Homo_sapiens 0 250
ENST00000461690 RPL21-007 nonsense_mediated_decay Homo_sapiens 0 505
ENST00000463605 RPL21P39-001 processed_pseudogene Homo_sapiens 0 472
ENST00000465083 RPL21P8-001 processed_pseudogene Homo_sapiens 0 231
ENST00000465295 RP11-30K9.1-001 processed_pseudogene Homo_sapiens 0 444
ENST00000466550 RPL21-006 retained_intron Homo_sapiens 0 294
ENST00000472093 RP11-267J23.1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000472975 RP11-112N19.2-001 processed_pseudogene Homo_sapiens 0 440
ENST00000477341 RP11-734J24.1-001 processed_pseudogene Homo_sapiens 0 468
ENST00000479171 RPL21P6-001 processed_pseudogene Homo_sapiens 0 226
ENST00000480465 RP11-492M23.2-001 processed_pseudogene Homo_sapiens 0 497
ENST00000482506 RPL21P116-001 processed_pseudogene Homo_sapiens 0 466
ENST00000482905 RPL21P120-001 processed_pseudogene Homo_sapiens 0 436
ENST00000484462 RPL21P119-001 processed_pseudogene Homo_sapiens 0 512
ENST00000485945 RP11-613M5.2-001 processed_pseudogene Homo_sapiens 0 503
ENST00000487382 CTD-2158P22.1-001 processed_pseudogene Homo_sapiens 0 346
ENST00000488289 RP13-585F24.1-001 processed_pseudogene Homo_sapiens 0 494
ENST00000491732 RPL21P129-001 processed_pseudogene Homo_sapiens 0 359
ENST00000493317 RPL21-009 protein_coding Homo_sapiens 0 414
ENST00000493466 RP11-9D8.1-001 processed_pseudogene Homo_sapiens 0 438
ENST00000495531 RP11-572P18.1-001 processed_pseudogene Homo_sapiens 0 532
ENST00000496412 CTD-2290C23.2-001 processed_pseudogene Homo_sapiens 0 399
ENST00000497298 RPL21P131-001 processed_pseudogene Homo_sapiens 0 460
ENST00000600955 RP1-228H13.1-001 processed_pseudogene Homo_sapiens 0 468

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