C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A3 pseudogene 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000444546 HNRNPA3P14-001 ENSG00000224494 9606 + 1:81426456-81427605 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLungMuscleTestisENST00000444546
Transcript ID Adrenal Brain Colon Heart Kidney Lung Muscle Testis
ENST00000444546 0.021±0.00 0.042±0.00 0.009±0.00 0.034±0.01 0.021±0.00 0.020±0.00 0.009±0.00 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00003A CIL_00003A_0002 CGP 1:78889764-81992436
CIL_0007JZ CIL_0007JZ_0001 UCNEbase 1:81231098-81907429
CIL_00003B CIL_00003B_0002 CGP 1:81306160-83999150

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168178 Gm6254-001 processed_pseudogene Mus_musculus 0 723
ENSMUST00000117582 Gm5940-001 processed_pseudogene Mus_musculus 0 717
ENSMUST00000121942 Gm6161-001 processed_pseudogene Mus_musculus 0 717
ENSMUST00000091130 Gm5641-201 protein_coding Mus_musculus 0 717
ENSMUST00000090792 Hnrnpa3-201 protein_coding Mus_musculus 0 717
ENSMUST00000164947 Hnrnpa3-202 protein_coding Mus_musculus 0 717
ENSMUST00000111962 Hnrnpa3-001 protein_coding Mus_musculus 0 717
ENSMUST00000111964 Hnrnpa3-002 protein_coding Mus_musculus 0 717
ENSMUST00000161973 Gm6397-001 processed_pseudogene Mus_musculus 0 712
ENSMUST00000089593 Gm7551-201 processed_pseudogene Mus_musculus 0 712
ENSMUST00000177820 Gm9242-201 protein_coding Mus_musculus 0 706
ENSMUST00000120017 Gm12960-001 processed_pseudogene Mus_musculus 0 697
ENSMUST00000119652 Gm11991-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000141974 Hnrnpa3-004 protein_coding Mus_musculus 0 688
ENSMUST00000117287 Gm14398-001 processed_pseudogene Mus_musculus 0 671
ENSMUST00000073014 Gm8991-201 protein_coding Mus_musculus 0 645
ENSMUST00000172004 Gm6153-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000071732 Gm6793-201 protein_coding Mus_musculus 0 634
ENSMUST00000125165 Gm11847-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000119643 Gm6758-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000122378 Gm14730-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000120104 Gm12129-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000119765 Gm9431-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000032395 Gm7399-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000185178 Gm17190-002 protein_coding Mus_musculus 0 468
ENSMUST00000191574 RP24-177N20.1-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000119442 Gm13369-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000166043 Gm17082-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000184369 Gm17190-001 translated_processed_pseudogene Mus_musculus 0 368
ENSMUST00000189662 RP23-472J11.2-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000111961 Hnrnpa3-003 protein_coding Mus_musculus 0 311
ENSMUST00000119037 Gm12986-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000117756 Gm12194-001 processed_pseudogene Mus_musculus 0 209
ENSMUST00000117573 Gm15678-001 processed_pseudogene Mus_musculus 5e-36 156
ENSMUST00000120487 Gm12229-001 processed_pseudogene Mus_musculus 1e-27 128
ENSMUST00000167880 Sbf2-006 retained_intron Mus_musculus 1e-17 95

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