C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6153
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172004 Gm6153-001 ENSMUSG00000090994 10090 - 1:87543635-87544692 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000172004
Transcript ID Bladder Brain Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000172004 0.008±0.00 0.008±0.00 0.065±0.00 0.060±0.03 0.092±0.06 0.216±0.18 0.182±0.25 0.378±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HR CIL_0003HR_0002 CGP 1:87470271-87573870
CIL_0003HS CIL_0003HS_0002 CGP 1:87476834-87597845
CIL_0003HY CIL_0003HY_0002 CGP 1:87509889-87720507

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392524 HNRNPA3-001 protein_coding Homo_sapiens 0 1471
ENST00000397093 RP3-522P13.2-001 processed_pseudogene Homo_sapiens 0 263
ENST00000401429 HNRNPA3P1-001 processed_pseudogene Homo_sapiens 0 1345
ENST00000411529 HNRNPA3-002 protein_coding Homo_sapiens 0 1471
ENST00000416838 HNRNPA3P3-001 processed_pseudogene Homo_sapiens 0 1343
ENST00000424470 HNRNPA3P15-001 processed_pseudogene Homo_sapiens 0 977
ENST00000424736 RP11-512F24.1-001 processed_pseudogene Homo_sapiens 0 848
ENST00000427514 HNRNPA3P4-001 processed_pseudogene Homo_sapiens 0 863
ENST00000432457 HNRNPA3-008 protein_coding Homo_sapiens 0 206
ENST00000435711 HNRNPA3-014 protein_coding Homo_sapiens 0 1471
ENST00000437410 HNRNPA3P12-001 processed_pseudogene Homo_sapiens 0 1264
ENST00000441511 AC012513.4-001 processed_pseudogene Homo_sapiens 0 900
ENST00000444546 HNRNPA3P14-001 processed_pseudogene Homo_sapiens 0 641
ENST00000455201 HNRNPA3P5-001 processed_pseudogene Homo_sapiens 0 1144
ENST00000472163 HNRNPA3P6-001 processed_pseudogene Homo_sapiens 0 843
ENST00000507583 RP11-395I6.1-001 processed_pseudogene Homo_sapiens 7e-22 106
ENST00000512222 HNRNPA3P13-001 processed_pseudogene Homo_sapiens 0 1138
ENST00000547726 HNRNPA3P10-001 processed_pseudogene Homo_sapiens 0 1328
ENST00000564298 HNRNPA3P11-001 processed_pseudogene Homo_sapiens 0 891
ENST00000591842 HNRNPA3P16-001 processed_pseudogene Homo_sapiens 0 737
ENST00000604913 HNRNPA3P9-001 processed_pseudogene Homo_sapiens 0 640

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