C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L23a pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471227 RPL23AP2-001 ENSG00000225067 9606 + 19:15611657-15612122 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungMuscleOvaryPlacentaENST00000471227
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Muscle Ovary Placenta
ENST00000471227 0.108±0.00 0.078±0.00 0.105±0.00 0.210±0.17 0.069±0.00 0.945±0.91 0.039±0.00 0.101±0.00 0.174±0.00 0.170±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019Y CIL_00019Y_0001 CGP 19:15508493-15630638

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 564
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 564
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 556
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000120313 Gm5384-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 542
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 534
ENSMUST00000118798 Gm7312-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000085589 Gm6177-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000178439 Gm21959-201 processed_pseudogene Mus_musculus 0 438
ENSMUST00000121008 Rpl23a-ps4-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000105085 Gm10923-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000085632 Rpl23a-ps1-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000121605 Gm12322-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000187124 RP23-466F9.2-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000105087 Gm3940-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000187732 RP23-349I9.17-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000186898 RP23-466F9.4-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000191583 Rpl23a-ps11-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000187331 RP23-466F9.8-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000189660 RP23-466F9.10-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000187903 RP23-349I9.24-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000187984 RP23-349I9.11-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000188369 Rpl23a-ps9-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000185244 RP23-349I9.15-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000185511 Rpl23a-ps10-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000119619 Gm7219-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000117846 Gm11673-001 processed_pseudogene Mus_musculus 5e-38 161

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