C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA pseudogene 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479228 RPSAP47-001 ENSG00000188856 9606 + 8:80558870-80559757 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000479228
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000479228 0.036±0.00 0.327±0.00 0.104±0.00 0.080±0.00 0.345±0.00 0.052±0.00 0.039±0.00 0.051±0.00 0.138±0.05 0.098±0.00 0.066±0.00 0.087±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NF CIL_0001NF_0001 CGP 8:80485619-80874781

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 1074
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 1062
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 1038
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 1024
ENSMUST00000120596 Rpsa-ps12-001 processed_pseudogene Mus_musculus 0 977
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 952
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 946
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 924
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 911
ENSMUST00000118817 Gm5764-001 processed_pseudogene Mus_musculus 0 774
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000059546 Rpsa-ps2-201 processed_pseudogene Mus_musculus 0 628
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 608
ENSMUST00000162286 Gm16228-001 processed_pseudogene Mus_musculus 0 265

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