C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha 2, smooth muscle, aorta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000149990 acta2-001 ENSDARG00000045180 7955 + 12:18173666-18183279 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyENSDART00000149990
Transcript ID Brain Kidney
ENSDART00000149990 7.566±0.00 3.038±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1014
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 324
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 861
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 941
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 828
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0.000000000000007 84
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 972
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 898
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 861
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 231
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 941
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 523
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 523
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 523
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 523
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 2e-31 139
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 745
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 521
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 9.80909e-45 183
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 470
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 963
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 915
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1013
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 776
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 754
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 292
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 946
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 760
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 658
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 754
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1013
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 902
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 754
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 737
ENST00000417985 ACTBP1-001 processed_pseudogene Homo_sapiens 0 527
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 555
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 505
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 296
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 586
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 472
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 429
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 721
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 520
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 292
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 0 505
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 902
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 241
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 654
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 760
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 963
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 721
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 311
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 372
ENST00000480297 ACTA2-006 processed_transcript Homo_sapiens 0 464
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 592
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 555
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 549
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 444
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 701
ENST00000567299 CTC-543D15.1-001 processed_pseudogene Homo_sapiens 0 261
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 520

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