C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A3 pseudogene 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564298 HNRNPA3P11-001 ENSG00000260689 9606 - 15:57246960-57247893 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLungOvaryENST00000564298
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Lung Ovary
ENST00000564298 0.025±0.00 0.026±0.00 0.352±0.00 0.037±0.00 0.037±0.00 0.362±0.00 0.012±0.00 0.146±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VA CIL_0008VA_0001 VISTA 15:56833046-57433760
CIL_0007TG CIL_0007TG_0001 VISTA 15:56833830-57434754
CIL_0007OL CIL_0007OL_0001 UCNEbase 15:57134123-57288405

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120017 Gm12960-001 processed_pseudogene Mus_musculus 0 1037
ENSMUST00000117582 Gm5940-001 processed_pseudogene Mus_musculus 0 1029
ENSMUST00000091130 Gm5641-201 protein_coding Mus_musculus 0 1024
ENSMUST00000090792 Hnrnpa3-201 protein_coding Mus_musculus 0 1024
ENSMUST00000164947 Hnrnpa3-202 protein_coding Mus_musculus 0 1024
ENSMUST00000111962 Hnrnpa3-001 protein_coding Mus_musculus 0 1024
ENSMUST00000111964 Hnrnpa3-002 protein_coding Mus_musculus 0 1024
ENSMUST00000121942 Gm6161-001 processed_pseudogene Mus_musculus 0 1018
ENSMUST00000177820 Gm9242-201 protein_coding Mus_musculus 0 1018
ENSMUST00000161973 Gm6397-001 processed_pseudogene Mus_musculus 0 1002
ENSMUST00000168178 Gm6254-001 processed_pseudogene Mus_musculus 0 1000
ENSMUST00000117287 Gm14398-001 processed_pseudogene Mus_musculus 0 968
ENSMUST00000119652 Gm11991-001 processed_pseudogene Mus_musculus 0 957
ENSMUST00000125165 Gm11847-001 processed_pseudogene Mus_musculus 0 944
ENSMUST00000071732 Gm6793-201 protein_coding Mus_musculus 0 935
ENSMUST00000119643 Gm6758-001 processed_pseudogene Mus_musculus 0 896
ENSMUST00000032395 Gm7399-001 processed_pseudogene Mus_musculus 0 894
ENSMUST00000172004 Gm6153-001 processed_pseudogene Mus_musculus 0 891
ENSMUST00000166043 Gm17082-001 processed_pseudogene Mus_musculus 0 865
ENSMUST00000119775 Gm6506-001 processed_pseudogene Mus_musculus 0 861
ENSMUST00000119765 Gm9431-001 processed_pseudogene Mus_musculus 0 859
ENSMUST00000122378 Gm14730-001 processed_pseudogene Mus_musculus 0 850
ENSMUST00000120104 Gm12129-001 processed_pseudogene Mus_musculus 0 809
ENSMUST00000089593 Gm7551-201 processed_pseudogene Mus_musculus 0 776
ENSMUST00000111961 Hnrnpa3-003 protein_coding Mus_musculus 0 730
ENSMUST00000185178 Gm17190-002 protein_coding Mus_musculus 0 675
ENSMUST00000184369 Gm17190-001 translated_processed_pseudogene Mus_musculus 0 667
ENSMUST00000073014 Gm8991-201 protein_coding Mus_musculus 0 664
ENSMUST00000189662 RP23-472J11.2-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000117756 Gm12194-001 processed_pseudogene Mus_musculus 0 603
ENSMUST00000121434 Gm14052-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000120487 Gm12229-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000141974 Hnrnpa3-004 protein_coding Mus_musculus 0 505
ENSMUST00000119442 Gm13369-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000167880 Sbf2-006 retained_intron Mus_musculus 0 202
ENSMUST00000132392 Hnrnpa3-005 retained_intron Mus_musculus 1.4013e-45 187

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