C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bj
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000607124 HIST1H2BJ-001 ENSG00000124635 9606 - 6:27125897-27132750 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000607124
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000607124 0.332±0.00 0.166±0.00 0.230±0.00 0.084±0.00 0.518±0.00 0.178±0.00 0.345±0.04 0.547±0.00 0.196±0.11 0.354±0.04 1.827±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0001 VISTA 6:27032592-27634418
CIL_0000UC CIL_0000UC_0003 CGP 6:27125897-27135291

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 NAS:IEA nucleosome
GO:0002227 IDA innate immune response in mucosa
GO:0003677 NAS:IEA DNA binding
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006334 NAS nucleosome assembly
GO:0019731 IDA antibacterial humoral response
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0050830 IDA defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105106 Hist1h2bf-001 protein_coding Mus_musculus 0 507
ENSMUST00000018246 Hist1h2bc-001 protein_coding Mus_musculus 0 507
ENSMUST00000110455 Hist1h2bk-001 protein_coding Mus_musculus 0 497
ENSMUST00000110467 Hist1h2br-001 protein_coding Mus_musculus 0 496
ENSMUST00000051091 Hist1h2be-001 protein_coding Mus_musculus 0 496
ENSMUST00000091704 Hist1h2be-002 protein_coding Mus_musculus 0 496
ENSMUST00000079251 Hist1h2bg-001 protein_coding Mus_musculus 0 496
ENSMUST00000110469 Hist1h2bq-001 protein_coding Mus_musculus 0 496
ENSMUST00000110476 Hist1h2bm-001 protein_coding Mus_musculus 0 496
ENSMUST00000180288 Hist1h2br-201 protein_coding Mus_musculus 0 494
ENSMUST00000091749 Hist1h2bq-201 protein_coding Mus_musculus 0 494
ENSMUST00000091756 Hist1h2bl-001 protein_coding Mus_musculus 0 490
ENSMUST00000078156 Hist1h2bh-001 protein_coding Mus_musculus 0 484
ENSMUST00000110452 Hist1h2bj-001 protein_coding Mus_musculus 0 484
ENSMUST00000091709 Hist1h2bn-001 protein_coding Mus_musculus 0 479
ENSMUST00000099703 Hist1h2bb-001 protein_coding Mus_musculus 0 473
ENSMUST00000102982 Hist1h2bp-001 protein_coding Mus_musculus 0 462
ENSMUST00000110473 Hist1h2bp-002 protein_coding Mus_musculus 0 460
ENSMUST00000177113 Hist2h2bb-001 protein_coding Mus_musculus 0 440
ENSMUST00000117835 Gm12957-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000090781 Hist2h2be-001 protein_coding Mus_musculus 0 420
ENSMUST00000078267 Hist3h2ba-001 protein_coding Mus_musculus 0 411
ENSMUST00000117558 Hist3h2bb-ps-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000052776 Hist1h2ba-001 protein_coding Mus_musculus 0 357
ENSMUST00000051089 Hist2h2bb-201 protein_coding Mus_musculus 0 248

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