C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A3 pseudogene 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000547726 HNRNPA3P10-001 ENSG00000257851 9606 - 12:51712469-51713606 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyMuscleOvaryTestisENST00000547726
Transcript ID Adipose Bladder Breast Colon Kidney Muscle Ovary Testis
ENST00000547726 0.011±0.00 0.134±0.00 0.011±0.00 0.031±0.02 0.011±0.00 0.010±0.00 0.511±0.00 0.056±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JW CIL_0006JW_0001 CGP 12:51391317-51812864

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090792 Hnrnpa3-201 protein_coding Mus_musculus 0 1548
ENSMUST00000111964 Hnrnpa3-002 protein_coding Mus_musculus 0 1548
ENSMUST00000117582 Gm5940-001 processed_pseudogene Mus_musculus 0 1498
ENSMUST00000121942 Gm6161-001 processed_pseudogene Mus_musculus 0 1493
ENSMUST00000091130 Gm5641-201 protein_coding Mus_musculus 0 1493
ENSMUST00000164947 Hnrnpa3-202 protein_coding Mus_musculus 0 1493
ENSMUST00000111962 Hnrnpa3-001 protein_coding Mus_musculus 0 1493
ENSMUST00000177820 Gm9242-201 protein_coding Mus_musculus 0 1487
ENSMUST00000168178 Gm6254-001 processed_pseudogene Mus_musculus 0 1474
ENSMUST00000161973 Gm6397-001 processed_pseudogene Mus_musculus 0 1471
ENSMUST00000120017 Gm12960-001 processed_pseudogene Mus_musculus 0 1467
ENSMUST00000119652 Gm11991-001 processed_pseudogene Mus_musculus 0 1448
ENSMUST00000117287 Gm14398-001 processed_pseudogene Mus_musculus 0 1432
ENSMUST00000125165 Gm11847-001 processed_pseudogene Mus_musculus 0 1430
ENSMUST00000071732 Gm6793-201 protein_coding Mus_musculus 0 1382
ENSMUST00000172004 Gm6153-001 processed_pseudogene Mus_musculus 0 1328
ENSMUST00000119643 Gm6758-001 processed_pseudogene Mus_musculus 0 1327
ENSMUST00000122378 Gm14730-001 processed_pseudogene Mus_musculus 0 1314
ENSMUST00000119765 Gm9431-001 processed_pseudogene Mus_musculus 0 1286
ENSMUST00000119775 Gm6506-001 processed_pseudogene Mus_musculus 0 1282
ENSMUST00000120104 Gm12129-001 processed_pseudogene Mus_musculus 0 1245
ENSMUST00000032395 Gm7399-001 processed_pseudogene Mus_musculus 0 1171
ENSMUST00000089593 Gm7551-201 processed_pseudogene Mus_musculus 0 1105
ENSMUST00000166043 Gm17082-001 processed_pseudogene Mus_musculus 0 1090
ENSMUST00000191574 RP24-177N20.1-001 processed_pseudogene Mus_musculus 0 1064
ENSMUST00000111961 Hnrnpa3-003 protein_coding Mus_musculus 0 1031
ENSMUST00000120507 Gm12961-001 processed_pseudogene Mus_musculus 0 1009
ENSMUST00000185178 Gm17190-002 protein_coding Mus_musculus 0 952
ENSMUST00000073014 Gm8991-201 protein_coding Mus_musculus 0 909
ENSMUST00000184369 Gm17190-001 translated_processed_pseudogene Mus_musculus 0 887
ENSMUST00000141974 Hnrnpa3-004 protein_coding Mus_musculus 0 817
ENSMUST00000121434 Gm14052-001 processed_pseudogene Mus_musculus 0 791
ENSMUST00000189662 RP23-472J11.2-001 processed_pseudogene Mus_musculus 0 789
ENSMUST00000117756 Gm12194-001 processed_pseudogene Mus_musculus 0 784
ENSMUST00000119037 Gm12986-001 processed_pseudogene Mus_musculus 0 747
ENSMUST00000119442 Gm13369-001 processed_pseudogene Mus_musculus 0 701
ENSMUST00000120487 Gm12229-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000163579 Gm9064-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000118087 Gm13351-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000167880 Sbf2-006 retained_intron Mus_musculus 0 292
ENSMUST00000117573 Gm15678-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000132392 Hnrnpa3-005 retained_intron Mus_musculus 0 191

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