C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162030 AC098736.2-001 ENSMUSG00000100720 10090 - 1:19153422-19153966 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162030
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162030 3.970±0.65 0.401±0.01 15.869±3.10 10.992±4.69 1.142±0.28 1.201±0.41 1.733±0.88 3.102±0.35 11.619±13.96 2.528±0.24 7.684±0.85 11.508±19.22 21.368±25.25 2.595±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MC CIL_0007MC_0006 UCNEbase 1:18307438-19700223
CIL_000813 CIL_000813_0002 VISTA 1:18655282-19257504
CIL_00096L CIL_00096L_0002 VISTA 1:18806734-19407712
CIL_0005MY CIL_0005MY_0002 CGP 1:19103022-19238576

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 693
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 630
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 699
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 699
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 643
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 630
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 699
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 488
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 699
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 472
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 568
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 575
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 357
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 422
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 503
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 501
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 505
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 531
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 217
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 233
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 337
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 645
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 239
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 658
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 0 187
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 592

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